RNA id: TCONS_00055134


Basic Information

Item Value
RNA id TCONS_00055134
length 1764
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_028388
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 982028 ~ 992148 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGGTCATCTGATGCTGTGTACGTCACATGACACAAGCGCGGTCACATGATCTGCtgtatcaacacacacacacactcatccacagcAGAGACCTATTCAGTGTACAGTGAAGAGCAGCGATCCGGATCTGTGTGTTTCAGGCATGTGGTCAGCCTGTGTTTTATTTCTGGCCTTCTCCTCGGCCGCCTTAGCACTGGACAATGGGCTGATGAGGACCCCGCCGATGGGCTGGTTGGCTTGGGAGCGATTCCGCTGCGACATCGACTGTCAGAATGATCCCTACAACTGCATCAGTGAGCAGCTGTTCATGGATATGGCGGACCGGCTGTCAGAGGATGGATGGAAAGAGCTGGGCTACGTCTACGTCAACATCGACGACTGCTGGTCCTCCAAAGACAGAGATGCTCAGGGCCGACTGCAGCCCGACCCTAAGAGGTTTCCTCGAGGCATTCCTCATCTGGCGCAGTACGTCCATGACCGTGGGCTGAAGCTGGGCATCTATGGGGACATGGGCACGCTGACCTGCGGAGGGTATCCGGGAACCACACTGGACAAGATTGAGACAGACGCACAGACGTTTGCGGACTGGGGGATCGACATGCTCAAGTTGGACGGATGTTACTCCAACTCGTCCTATCAGGAACAAGGATACCCAATGATGTCGAAGGCCCTCAATGCTACCGGTCGTCCTATTGGCTACTCCTGCAGTTGGCCTGCCTACCAGGGAGGCCTCCCACCTAAAgtgaactacacTCTGCTGGGTCAGATCTGTAACCTGTGGAGGAACTATGATGATATCCAGGACTCGTGGGACAGTGTGATGGGCATCGTGGACTGGTTCTTCGACAATCAGGACGCCCTTCAGCCTGCAGCCGCACCAGGACAGTGGAACGACCCAGACATGCTGATCATTGGAGACTTCAGCCTCAGTCTGGATCAATCTCGGGCTCAGATGGCTCTATGGTCCATCATGGCGGCTCCGCTCTTCATGTCCAACGACCTGCGCACCATCAGCAGCGCCGCTCGCTCCGTCCTCCAGAATAAAGCGGTCATCTCCATCAACCAGGACCCGCTGGGCATCCAGGGCAGACGCCTGCTCAAGGAGAAGAGCGGGATCCAGGTGTTCCAGCGGCCGCTCTCTAAAGGAGCCAGCGCTCTGGTGTTTTTCAGCCGCAGGTCTGATATGCCATACCGCTATACCACATCTCTGAAGACTCTGGGATACCAGCCTGGAGTATTTGAGGTGTTTGACGTATTCTCAGAGCAGCGTTTGCCTGAACTGAAGGATAGCACTCAGTTCACCGTGTCCATTAACCCATCTGGCGTGGTCATGTGGTACATCTATCCGGCTGCTGATCGGTGGAAAGAGGCGGAGTTTGAGGGGTTCAGCAAGAAGCTCATAGGCCCGAAGTTTCATCGACATGCTAATGAGGTTGACGCCCCCCTGGTGCTTTGATTGGCATTGCGAGGCTCCGCCTATCTGGAATATATAACACACTCAGGGACTTTTAAACAGTGAATCGTGCCTACAATGTTGATCTGAGATTTccctttttattgattttctctTTGATAAAGCTGTTCATATTAATCAGATGTTTCTAAAAGCTTTTGCACTGACCTTCAGAAGAAGCCTGTTTACAAACCCATAGCATAAGTCAATTATGTAAAGTTAATTTAGCACTAATAATGTTCATGATCAAatgtactgctgtttttaaacCCAAATAAACACACTTGATTGTCAGACTCAGTCACTGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009311 oligosaccharide metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0046477 glycosylceramide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004557 alpha-galactosidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series
ko04142 Lysosome

ZFIN:

id description
ZDB-GENE-051113-256 Predicted to enable alpha-galactosidase activity. Predicted to be involved in glycoside catabolic process; glycosylceramide catabolic process; and oligosaccharide metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in angiokeratoma and neuroaxonal dystrophy. Orthologous to human NAGA (alpha-N-acetylgalactosaminidase).

Ensembl:

ensembl_id ENSDART00000160902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057978 lncRNA downstream 64199 919752 ~ 921761 (-) True XLOC_028385
TCONS_00057977 lncRNA downstream 81938 899962 ~ 904022 (-) True XLOC_028383
TCONS_00057976 lncRNA downstream 81972 899962 ~ 903988 (-) False XLOC_028383
TCONS_00055118 lncRNA downstream 213568 771352 ~ 772392 (-) True XLOC_028378
TCONS_00055117 lncRNA downstream 216329 769043 ~ 769631 (-) False XLOC_028378
TCONS_00057979 lncRNA upstream 18812 1010960 ~ 1013095 (-) True XLOC_028389
TCONS_00057307 lncRNA upstream 30168 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00057980 lncRNA upstream 36688 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057981 lncRNA upstream 62513 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057982 lncRNA upstream 80119 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00055132 mRNA downstream 20693 958051 ~ 965267 (-) True XLOC_028387
TCONS_00055130 mRNA downstream 37184 929557 ~ 948776 (-) False XLOC_028386
TCONS_00055129 mRNA downstream 77139 905483 ~ 908821 (-) True XLOC_028384
TCONS_00055128 mRNA downstream 95740 862048 ~ 890220 (-) True XLOC_028382
TCONS_00055127 mRNA downstream 105545 861444 ~ 880415 (-) False XLOC_028382
TCONS_00055135 mRNA upstream 22400 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055136 mRNA upstream 62560 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055137 mRNA upstream 111010 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055138 mRNA upstream 309288 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA upstream 311189 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055131 other downstream 37118 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 177507 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 300541 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 1068376 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1682958 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3500418 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3554061 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3938263 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00816340_00821508.mRNA True 1721 mRNA 0.53 9 CI01000068 816340 ~ 821792 (+)