RNA id: TCONS_00055140


Basic Information

Item Value
RNA id TCONS_00055140
length 1413
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_028396
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1388965 ~ 1403077 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacTCGCAACAACACGACAATGAACACAAAGAAAACTGATGCACAGAAACACATCCGTGCTCTGTTCACAGTGCCCAGAcagagGTTGGATCTGCTGCCGTTTTACGCCCGTCTGGTGGCCACTCTTCACCCGTGTATGTCTGACGTGGCTGAAGACCTCTGCTCCATGCTCAAAGGAGACTTCAGATTTCATatCAGAAAGAAGGACCAAATCAACATTGAGACCAAGAATAAGACGGTGAGGTTCATCGGAGAGTTGGCCAAGTTTAAGATGTTCTCCAAAACAGACACGCTGCACTGCCTGAAGGTGAGCAGAATGGCCTGCACGCTGCTGGAGACGTGTGGACGTTTCCTCTTCCGCTCTCCAGATTCTCACCTGCGCACGAGTGTCCTGCTGgaGCAGATGATGCGCAAGAAGCAGGCTCAGCATCTGGATGTGCGCTACGTGACCATGGTGGAAAACGCCTATTACTACTGCAACCCTCCGCCGATGGAGAAGACGGTGCGCAGGAAGAGGCCTCCGCTGCAGGAGTACATCCGAAAACTGCTCTATAAAGACCTGTCCAAAGTCACCACTGAGAAGgttttGAGGCAGATGCGTAAGCTGCCGTGGCATGACAGTGAGGTGAAGGGTTACCTGATCTGCTGTATGGTCAACATCTGGAACGTGAAGTATAACAGACTGGTGGCGTATCAGGAGGACGTGGGCATTCATGTGGTGGACGGAGTGCTGGAGGATATTCGCCTCGGCATGGagGTGAATCAGCCCAAGTTTAACCAGCGGCGGATCAGCAGTGCTAAGTTTCTGGGTGAGCTGTATAACTATCGAATGGTGGAGTCTGCTGTCATCTTCAGGACTCTGTTCTCCTTCATCTCGTTCGGGGTGAACACGGACGGTACTGCCAGTCCTCTGGATCCGCCGGAGCATCTGTTTCGCATCCGCATGGTCTGCACACTTCTGGATACCTGTGGACAGTACTTCGACCGCGGCTCCAGCAAGAAGAAGCTCGACTGCTTCCTCATTTACTTCCAGaggtACATCTGGTGGAAGAAGAGTCTGGACGTGTGGACTAAAGATCAGCCGTTCCCTATTGACATCGAGTACATGATCACAGACACACTGGAGATGCTGAGACCCAAGATGAAGCTCTGCTCATCTCTGGAGGAGGCCTGCGCTCACGTCAGCCTGCTGGAGAGAGAGTTCCTTGTCAAACTGGgacTGGAGAAGGACGGCCGCTCCTCCAGCTCTTTGGGCGAGAGTGAAGCTCTGGATgaagaggatgatgatgatgaagatgaaggagGAGCGGAGACGGAGGAGCAGTCCGGGAACGAGAGCGAGATGAATGAACCCGAGGAGGAGGTGAACATCATCACTGTAAACGCACACAGAGCCACTGCACAGATATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189813

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057982 lncRNA downstream 129224 1072267 ~ 1259741 (-) False XLOC_028393
TCONS_00057983 lncRNA downstream 154729 1223164 ~ 1234236 (-) True XLOC_028394
TCONS_00057981 lncRNA downstream 284189 1054661 ~ 1104776 (-) False XLOC_028393
TCONS_00057980 lncRNA downstream 352919 1028836 ~ 1036046 (-) True XLOC_028392
TCONS_00057307 lncRNA downstream 365265 1022316 ~ 1023700 (-) True XLOC_028391
TCONS_00055154 lncRNA upstream 428661 1831738 ~ 1839164 (-) True XLOC_028405
TCONS_00057984 lncRNA upstream 445583 1848660 ~ 1855771 (-) True XLOC_028406
TCONS_00057308 lncRNA upstream 512709 1915786 ~ 1916566 (-) False XLOC_028408
TCONS_00057985 lncRNA upstream 513198 1916275 ~ 1978987 (-) False XLOC_028408
TCONS_00057986 lncRNA upstream 538956 1942033 ~ 1979057 (-) False XLOC_028408
TCONS_00055138 mRNA downstream 28470 1301436 ~ 1360495 (-) False XLOC_028395
TCONS_00055139 mRNA downstream 64824 1303337 ~ 1324141 (-) True XLOC_028395
TCONS_00055137 mRNA downstream 241310 1103158 ~ 1147655 (-) True XLOC_028393
TCONS_00055136 mRNA downstream 320810 1054708 ~ 1068155 (-) False XLOC_028393
TCONS_00055135 mRNA downstream 373069 1014548 ~ 1015896 (-) True XLOC_028390
TCONS_00055141 mRNA upstream 66029 1469106 ~ 1497384 (-) True XLOC_028397
TCONS_00055142 mRNA upstream 244021 1647098 ~ 1684335 (-) False XLOC_028398
TCONS_00055143 mRNA upstream 244975 1648052 ~ 1684347 (-) True XLOC_028398
TCONS_00055144 mRNA upstream 286235 1689312 ~ 1720648 (-) True XLOC_028399
TCONS_00055145 mRNA upstream 329748 1732825 ~ 1757460 (-) True XLOC_028400
TCONS_00055131 other downstream 440123 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055123 other downstream 580512 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055111 other downstream 703546 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055166 other upstream 657447 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 1272029 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055220 other upstream 3089489 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055225 other upstream 3143132 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055239 other upstream 3527334 4930411 ~ 4932524 (-) True XLOC_028460

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00403574_00413532.mRNA True 3121 mRNA 0.51 13 CI01000068 403574 ~ 413970 (+)