RNA id: TCONS_00058009


Basic Information

Item Value
RNA id TCONS_00058009
length 3021
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id XLOC_028462
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4962957 ~ 4967711 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGATGGAAAGTAAAGGAGTGTGAAGAGAAGACGCGACTCAAACATAGGTGAGACAAATCTCTAAAATGCAGTGATGCTGCTTTTGAATCACTGATTCATTAAACTCTGAATCTTTCATTTGAATCTTTAATTTGATTCTTTAAATTGATTCTTTGATTTGAATCTTTATTTTGACTCTTTGATTGAATCAGTGGTTCAGAGCACACATTTTTCTGCCATCCTGATTTTAGAAAGATGCTCAACAAAATCCTGAGATGTCAGTGtttctccactagagggcgctgatgTGATGAATCTACAATATAGTTTAAGctgatctttaaaacaaatgagcTGAAATATTGAAAAGCATCAATCATCACCACTCGAGTCTCTTTATCTTCACACAGACATTCAGCCTGAGCTAGAAGAGACGTCTAGAAGAACCAGACGGTAAGAGCATCTTACTTTAGCTGATTCTGTCTGACCAAATCAACAAGCTCAGTTTAGATGACAGACATGAATAATCATCAGACATTAATAATCATCAGACATTAATAATCAGCAGACATTAATAATCACTGAAGACTAGAACTAGAACATGATGCCTGATGGGAAACGTTCAGCCTCAGATATCATGTTCAGATGCTTTGATGTGTTCAAGAGCAGACGTGTGTGTATTGAAACAGGCCCGTAATCAGGTGGACATTATAGGTAAAGAGTGTAAAGTCAGGGCTTCATCAGTGAGGATATGATGAAGAACCACCTTCCTCTTCCTCATGGCTTCAGTTCACATGTAAAGCTGTATTTCCAGATCCTGCACATGGCTTCTCTCTTCTTGAAATCCTCAGCATGTTTCAGAGAGCTGCATGAGCTGAACTGAGTCCATCAGAGACGAGAGAGAGACGACATGTGCAGCGTAATGAACAGATATCAGTGTAGATCCATCACCAGAAGACAtctagtaaaacaaaacaacacatcaAGAGGTTATTTACCAGATGCTGCATCCACTGATTCAGTTCTGAGTGCAGGATCAGAAAGGCTGACGTCCATCATGTGCACTGATCACATAATCagtcttcttcttattattagttTCATGTCAGACTGCAAACAACACTAATCAGGTGCATATCGCCACCTACTGTATCGGAGTGTGCAGGAGGATCATGTGCTGGAAATTGACTTTTAAACGTCAGATATTAGTCTTGAGTCATCtcttttaaagttattaaatgtgttatgccatttttgtgtaatttgtttatCTTTTCATCTCAGCTGGACTTAAgattaatatattactttttaaaatgaacttttcctagtatatattttctttcttttgtttaagcattattatcattattatataatcCTATAATATATCCTAAATCCTATAATCTAGCTGTGTATGCTTCAGATATCTCACAACAGCTCCTCTGCAAATGTGTGTCTCctcagtgattgacagctaatataaaTCCGCCTCCAGCAATAAACTGACCGTCTGTCTGGAACTCGCAAACACAGACACGCGGAGTGATACAAACTGTGAACAGTGTCAATGTTGTAAACTGACCGTCTGTCTGGAACTCGCAAACACAGACACGCGGAGTGATACAAACTGTGAACAGTGTCAATGTTGTTCGGTCTGAATATTACTCCTCTGAACTCCTGGACTAACTTGTGCAACATAGAGTTTATTTGCTTTATAAATGTgcatgtttaaacatttaaagtgtAAAGAGCCAATTAAGCTTATAATTCTGCTTAAACTAATATAATCTGCGTCACAAACCCAAATCGCTGATCAAACACGACACACATCAGGATGAACTGAGGATGAATTagctttacacacacactacaggcaGATCGCCTTGTGTACACACTGAACACGTGCTTAATTCAACAGCATCACTCTTACCCTCTCAGTTGAGTGCACAGAGTTAACCCACGATGTTTTGCGAGTCGAAATCCTGTCAAAATGATGACTTTGTTTACAACTGGATGAGTTTAAAGCTTCAGTCTCCTGTGTGCTGCTGCAGCTCGTGTTGATCCTGAACTGCAGTTCTCCAGCGCTCCACTAGACGGCGTCACGCACTGACAGACACACAGAGACACGCCCCCAGCAGCGACAGAACACATGATGACAGCTGAATCAGCTGGTGTTTACTGCTTAAATAACTGCTCTAAAGATGCAGTCTTCTGTCTTTTAGAGGAGCTGAAGCTTTGCTCGCATCATAAACCTCCAACTTTAATGAGCAGCAGCTGAAACAGAGACGGTTTGAAGGCCAAAACCTGGACTTCAGCAGTGGGTGAGTTTCAGCATTCATTTACTCTTATTGTGTTAATATGATCATGTTTGAGTGCTGTAATGAAGAGCACATCAGTATATTCAGAATTAGAGCTGCACTGAATTAATGATGTTGCTGATCGAGCTGTTTAGGCTGCAGAGAAGTGAAGGTTAGTGTGTGGATGATTAATGATGTTATTATCTTAAAAACTGTTAGATTCTGATTGTAATCATTTATATTTGGACATTTCTGTGTTTATTTCTATATACTGATGTTTAAATCTTATTTTATCGTGTTTTCCtccttattttcattatttttttttatatttgacatCTAAAAATGTGCTCATGTTAACCAGAAGCTCCTGCATTAGTGTGGCTGGTGATGGTCCAGTGGTCAGAGCACATGGCATGAGCTCTGAACCCTCACAGAGGACCTGAGATCAAACCCCTCCTCAGAGCATGAGGGATCTTTAACATATTTATAATGAAATCGCAGCTCATCTACAGGTAAAGAGTCAAACATGAACTCCTGCAGGTGTTCAGACAAGAgatctgtggctcagtggtaagagCTCATCAGATCTCATCCATCACAGTTGATCTGTGTTCAAACCCCACTTCAGAAGATTGAGTCAacacaagtttatttttattcaattcttTATTGTGAATTCACAGGTCAGCAGTCCAACATCAGTTCCAGCAGGTGTTCAGACATGGAGATCTGTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058006 lncRNA downstream 65 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA downstream 1116 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00055221 lncRNA downstream 446449 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00055216 lncRNA downstream 588253 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 706682 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055247 lncRNA upstream 138796 5105620 ~ 5108907 (-) True XLOC_028465
TCONS_00055254 lncRNA upstream 315178 5282002 ~ 5282832 (-) True XLOC_028467
TCONS_00058021 lncRNA upstream 454922 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00058020 lncRNA upstream 454922 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00055265 lncRNA upstream 454922 5421746 ~ 5424183 (-) False XLOC_028471
TCONS_00055238 mRNA downstream 30338 4930406 ~ 4932619 (-) False XLOC_028460
TCONS_00055236 mRNA downstream 128340 4832144 ~ 4834617 (-) False XLOC_028459
TCONS_00055237 mRNA downstream 128610 4832150 ~ 4834347 (-) True XLOC_028459
TCONS_00055235 mRNA downstream 167752 4782721 ~ 4795205 (-) True XLOC_028458
TCONS_00055234 mRNA downstream 182447 4758464 ~ 4780510 (-) True XLOC_028457
TCONS_00055241 mRNA upstream 4218 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055240 mRNA upstream 4218 4971042 ~ 5019113 (-) False XLOC_028463
TCONS_00055242 mRNA upstream 4314 4971138 ~ 5018705 (-) True XLOC_028463
TCONS_00055243 mRNA upstream 58801 5025625 ~ 5092335 (-) False XLOC_028464
TCONS_00055244 mRNA upstream 75743 5042567 ~ 5077158 (-) True XLOC_028464
TCONS_00055239 other downstream 30433 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 392152 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 466166 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2276867 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2800233 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055263 other upstream 403232 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1469940 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1598829 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2218371 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 2255256 7222080 ~ 7222367 (-) True XLOC_028496