RNA id: TU2382963


Basic Information

Item Value
RNA id TU2382963
length 222
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2083925
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42125930 ~ 42126151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAAGAAGCCTACTGGCTGAGGGGAGCAGCAGCCCACTGGCTGAAAGGAGAAGAAGCCTACTTTCTGAGTGGAGCAGAGTCCTCTGAACCTCATATGATGAATCTTGTTGCCTGCCTGAGTGTGAATTTTtagcttaaagggatacttcagcaTGTTGGCAATGAGCTCCTTTATCctcttccccagagtcagatgaactcatggatacccaTACACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382961 lncRNA upstream 7816 42117834 ~ 42118114 (+) True G2083923
TU2382959 lncRNA upstream 9005 42116596 ~ 42116925 (+) True G2083921
TU2382956 lncRNA upstream 10209 42112386 ~ 42115721 (+) True G2083918
TU2382943 lncRNA upstream 27684 42082240 ~ 42098246 (+) True G2083905
TU2382924 lncRNA upstream 73893 42051180 ~ 42052037 (+) True G2083889
TU2382987 lncRNA downstream 50818 42176969 ~ 42177408 (+) False G2083947
TU2382989 lncRNA downstream 50818 42176969 ~ 42177408 (+) True G2083947
TU2383178 lncRNA downstream 78990 42205141 ~ 42205341 (+) True G2084111
TU2383206 lncRNA downstream 89913 42216064 ~ 42216396 (+) True G2084128
TU2383237 lncRNA downstream 134372 42260523 ~ 42261637 (+) False G2084156
LOC118944685 mRNA upstream 344094 41778921 ~ 41781836 (+) True LOC118944685
XM_036965019.1 mRNA upstream 554008 41521446 ~ 41571922 (+) True dhx36
XM_036965039.1 mRNA upstream 619319 41485189 ~ 41506611 (+) False LOC110507232
XM_021588498.2 mRNA upstream 922235 41194800 ~ 41203695 (+) True LOC110508050
XM_036965615.1 mRNA upstream 940466 41180486 ~ 41185464 (+) True LOC110508049
XM_021587167.2 mRNA downstream 105207 42231358 ~ 42242002 (+) True LOC110507284
XM_036965239.1 mRNA downstream 272538 42398689 ~ 42416136 (+) True LOC110507235
XR_005040057.1 mRNA downstream 358705 42484856 ~ 42492905 (+) False LOC110508060
XM_021588510.2 mRNA downstream 358708 42484859 ~ 42488600 (+) False LOC110508060
XM_036965041.1 mRNA downstream 365309 42491460 ~ 42492431 (+) True LOC110508061
TU2382880 other upstream 13894 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 112938 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 618757 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 913158 41212204 ~ 41212772 (+) True G2083239
TU2381889 other upstream 1141076 40981370 ~ 40984854 (+) True G2083005
TU2383238 other downstream 134372 42260523 ~ 42261637 (+) True G2084156
TU2383825 other downstream 937137 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1406119 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1606244 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1992072 44118223 ~ 44119239 (+) True G2085314

Expression Profile