RNA id: TU2383348


Basic Information

Item Value
RNA id TU2383348
length 215
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2084256
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42340676 ~ 42340890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctatctgctctctctgctctctgctctctctctctctctctctctgctctctctctctgctctctccatctctgctctctctctctgctctctctctctctctctctctctgctctctctctctgctttctctctccatctctgctctctctctctgctctctctctctgctctttctctcaatgtgggttgtatttacaatggtgtttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383342 lncRNA upstream 18878 42321499 ~ 42321798 (+) True G2084250
TU2383237 lncRNA upstream 79039 42260523 ~ 42261637 (+) False G2084156
TU2383206 lncRNA upstream 124280 42216064 ~ 42216396 (+) True G2084128
TU2383178 lncRNA upstream 135335 42205141 ~ 42205341 (+) True G2084111
TU2382987 lncRNA upstream 163268 42176969 ~ 42177408 (+) False G2083947
TU2383356 lncRNA downstream 14600 42355490 ~ 42355715 (+) True G2084264
TU2383357 lncRNA downstream 15621 42356511 ~ 42356732 (+) True G2084265
TU2383366 lncRNA downstream 21716 42362606 ~ 42362814 (+) True G2084274
TU2383379 lncRNA downstream 34943 42375833 ~ 42376782 (+) True G2084285
TU2383388 lncRNA downstream 41790 42382680 ~ 42382932 (+) True G2084294
XM_021587167.2 mRNA upstream 98674 42231358 ~ 42242002 (+) True LOC110507284
LOC118944685 mRNA upstream 558840 41778921 ~ 41781836 (+) True LOC118944685
XM_036965019.1 mRNA upstream 768754 41521446 ~ 41571922 (+) True dhx36
XM_036965039.1 mRNA upstream 834065 41485189 ~ 41506611 (+) False LOC110507232
XM_021588498.2 mRNA upstream 1136981 41194800 ~ 41203695 (+) True LOC110508050
XM_036965239.1 mRNA downstream 57799 42398689 ~ 42416136 (+) True LOC110507235
XR_005040057.1 mRNA downstream 143966 42484856 ~ 42492905 (+) False LOC110508060
XM_021588510.2 mRNA downstream 143969 42484859 ~ 42488600 (+) False LOC110508060
XM_036965041.1 mRNA downstream 150570 42491460 ~ 42492431 (+) True LOC110508061
XM_021587166.2 mRNA downstream 161652 42502542 ~ 42503473 (+) True LOC110507283
TU2383238 other upstream 79039 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 228640 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 327684 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 833503 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1127904 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 722398 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1191380 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1391505 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1777333 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 2067163 44408053 ~ 44410050 (+) True G2085969

Expression Profile