RNA id: TU2383498


Basic Information

Item Value
RNA id TU2383498
length 1676
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2084397
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42495988 ~ 42497663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGGTTTTATGTACATACAGGTCTATAAGCTAATGCTAACAAAATACAGGGATAGAGGTGGGAATAGTTCAGTGATATAGATACAAGTCTATAAgctaatttttttttatttatttcacctttatttaaccagataggctagttcagaacaagtcctcatttacaactgtgacctggccaaaataaagcaaagcagtgcacaaacaacaacacagagttacacatggaataaacaagcgtacagtcaataacacaatagaaaaaaaagaaagtctatatacagtgtgtgcaaatggcatgaggaggtaaggcaataaatagaccatactagcgaagtaattacaatttagcaatcatgagcagatgatgatgtgcaagtagaaatactggtgtgcaaaagagcagaaaagtaaataaaaacagtatagggatgaggtagttagattgggcgggctatttacagatgggctatgtacagctgcagcgatcggttagctgctcagaaagctgatgcttaaagttagtatGGGAAATTTAAGTCTCCAGCTTAAGCGATttctgcaattcgttccagtcattggcagcagagaactggaaggaaaggcggccaaatgaggtgttggctttggggatgaccagtgagatatacgtacatgctggagcgcgtgctatgggtgggtgttgttatcgtgaccagtgagctgagataaggcggagctttatctagcatagacttatagatgatcgggagccagtgggtctggcgactaatatgtagcgagggccagctgactagaacatacaggtcgcagtggtgggtggtataaggggctttggtgacaaaatggatggcactgtgatagactgcatccagtttgctgagtagtattggaagctattggaagctattttgtaagtggcatcaccaaagtcgaggattggtagggtatgtttggcggcgtgagtaaggaaggctttgttgcgaaataggaagccgattctagatttaattttggatttggagatgtttaatataagtctggaaggagagtttacagtctagccagacacctaggtaattgtagttgtccacatattctaagtcagaaccatccagagtagtgatgctagtctggcaggcgggtgcgggcagcgaacggttgaaaagcatgcatttggttttactagcgtttaagagcatttggaggccactgaaggagtgttgtatggcattgaagcttgtttggagatGAGTtgaaacagtgtccaaagaagggccagatgtaaaTGAATGGTGTTGCCTGCgtggaggtggatcagggaatcacccgcagcaagagcaacaacgttgatatatacagagaaaagagtcggcctgagaattgaaccctgtggtacccccatagagtcTGCCAGAGGTCAGTGAACCAGGCagggcagtcatttgagaaactaaggctgttgagtctgccgataagaatacggtgattgacagagtcgaaagccttggccaggtcgatgaagacggcagCACATTACTGTCTTTtctatggcggttatgatattgtttagtacctgcaaccgtgaccagctcggaaaccggattgcacagcgaagAAGGTAAGgagggattcgaaatggtcagtgatctgtttgttaactttgctttcgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383495 lncRNA upstream 6960 42488803 ~ 42489028 (+) True G2084394
TU2383491 lncRNA upstream 8287 42486556 ~ 42487701 (+) True LOC110508060
TU2383462 lncRNA upstream 36581 42459190 ~ 42459407 (+) True G2084362
TU2383455 lncRNA upstream 42500 42451423 ~ 42453488 (+) True G2084357
TU2383451 lncRNA upstream 61430 42434320 ~ 42434558 (+) True G2084353
TU2383499 lncRNA downstream 1648 42499311 ~ 42500446 (+) True G2084398
TU2383501 lncRNA downstream 3952 42501615 ~ 42501828 (+) True G2084400
TU2383502 lncRNA downstream 4526 42502189 ~ 42502444 (+) True G2084401
TU2383508 lncRNA downstream 21982 42519645 ~ 42519875 (+) True G2084407
TU2383514 lncRNA downstream 59446 42557109 ~ 42557308 (+) True G2084412
XR_005040057.1 mRNA upstream 3083 42484856 ~ 42492905 (+) False LOC110508060
XM_036965041.1 mRNA upstream 3557 42491460 ~ 42492431 (+) True LOC110508061
XM_021588510.2 mRNA upstream 7388 42484859 ~ 42488600 (+) False LOC110508060
XM_036965239.1 mRNA upstream 79852 42398689 ~ 42416136 (+) True LOC110507235
XM_021587167.2 mRNA upstream 253986 42231358 ~ 42242002 (+) True LOC110507284
XM_021587166.2 mRNA downstream 4879 42502542 ~ 42503473 (+) True LOC110507283
XM_021588508.2 mRNA downstream 13156 42510819 ~ 42515563 (+) True LOC110508059
XM_036965661.1 mRNA downstream 76919 42574582 ~ 42629238 (+) False LOC110508057
XM_036965662.1 mRNA downstream 76919 42574582 ~ 42629238 (+) False LOC110508057
XM_036965660.1 mRNA downstream 76920 42574583 ~ 42629238 (+) True LOC110508057
TU2383238 other upstream 234351 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 383952 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 482996 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 988815 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1283216 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 565625 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 1034607 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1234732 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1620560 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1910390 44408053 ~ 44410050 (+) True G2085969

Expression Profile