RNA id: TU2383615


Basic Information

Item Value
RNA id TU2383615
length 223
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2084492
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42638005 ~ 42638227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctttacttttactcaaatatgacaattgggtactttttccaccactgaacaaaaggacttgagtttctgtacatTGTCACAATAACACCATGCAACATACAGCAGCtcctttcttcttcccagagagttctttattcctgtctgcacgaTGTAGGaagaacccaactggctgtatggacggggacagtatatcccagagagttctttattcctgtctgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383609 lncRNA upstream 7224 42630568 ~ 42630781 (+) True G2084486
TU2383564 lncRNA upstream 35169 42601015 ~ 42602836 (+) True G2084448
TU2383572 lncRNA upstream 43936 42592866 ~ 42594069 (+) True G2084455
TU2383514 lncRNA upstream 80697 42557109 ~ 42557308 (+) True G2084412
TU2383508 lncRNA upstream 118130 42519645 ~ 42519875 (+) True G2084407
TU2383616 lncRNA downstream 2418 42640645 ~ 42640875 (+) True G2084493
TU2383620 lncRNA downstream 6189 42644416 ~ 42644634 (+) True G2084497
TU2383642 lncRNA downstream 24462 42662689 ~ 42662945 (+) True G2084517
TU2383657 lncRNA downstream 36901 42675128 ~ 42675671 (+) True G2084530
TU2383663 lncRNA downstream 59707 42697934 ~ 42699907 (+) True G2084536
XM_036965661.1 mRNA upstream 8767 42574582 ~ 42629238 (+) False LOC110508057
XM_036965662.1 mRNA upstream 8767 42574582 ~ 42629238 (+) False LOC110508057
XM_036965660.1 mRNA upstream 8767 42574583 ~ 42629238 (+) True LOC110508057
XM_021588508.2 mRNA upstream 122442 42510819 ~ 42515563 (+) True LOC110508059
XM_021587166.2 mRNA upstream 134532 42502542 ~ 42503473 (+) True LOC110507283
XM_036965642.1 mRNA downstream 28430 42666657 ~ 42795200 (+) False cux1b
XM_036965636.1 mRNA downstream 28430 42666657 ~ 42796336 (+) False cux1b
XM_036965638.1 mRNA downstream 28430 42666657 ~ 42796336 (+) False cux1b
XM_036965639.1 mRNA downstream 28430 42666657 ~ 42796336 (+) False cux1b
XM_036965640.1 mRNA downstream 28430 42666657 ~ 42796336 (+) False cux1b
TU2383238 other upstream 376368 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 525969 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 625013 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1130832 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1425233 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 425061 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 894043 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1094168 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1479996 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1769826 44408053 ~ 44410050 (+) True G2085969

Expression Profile