RNA id: TU2383620


Basic Information

Item Value
RNA id TU2383620
length 219
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2084497
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42644416 ~ 42644634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggataggcctttaaataaagtccaacaatgggataggcctttaaataaagtccaacaataggataggcctttaaataaagtccaataatgggataggcctttaaataaagtccaacaatggaataggcctttaaataaagtccaacaatgggataggcctttaaataaagtccaataatgggataggcctttaaataaagtccaacaatggaataggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383616 lncRNA upstream 3541 42640645 ~ 42640875 (+) True G2084493
TU2383615 lncRNA upstream 6189 42638005 ~ 42638227 (+) True G2084492
TU2383609 lncRNA upstream 13635 42630568 ~ 42630781 (+) True G2084486
TU2383564 lncRNA upstream 41580 42601015 ~ 42602836 (+) True G2084448
TU2383572 lncRNA upstream 50347 42592866 ~ 42594069 (+) True G2084455
TU2383642 lncRNA downstream 18055 42662689 ~ 42662945 (+) True G2084517
TU2383657 lncRNA downstream 30494 42675128 ~ 42675671 (+) True G2084530
TU2383663 lncRNA downstream 53300 42697934 ~ 42699907 (+) True G2084536
TU2383651 lncRNA downstream 155068 42799702 ~ 42801989 (+) True G2084525
TU2383652 lncRNA downstream 156055 42800689 ~ 42801521 (+) True G2084526
XM_036965661.1 mRNA upstream 15178 42574582 ~ 42629238 (+) False LOC110508057
XM_036965662.1 mRNA upstream 15178 42574582 ~ 42629238 (+) False LOC110508057
XM_036965660.1 mRNA upstream 15178 42574583 ~ 42629238 (+) True LOC110508057
XM_021588508.2 mRNA upstream 128853 42510819 ~ 42515563 (+) True LOC110508059
XM_021587166.2 mRNA upstream 140943 42502542 ~ 42503473 (+) True LOC110507283
XM_036965642.1 mRNA downstream 22023 42666657 ~ 42795200 (+) False cux1b
XM_036965636.1 mRNA downstream 22023 42666657 ~ 42796336 (+) False cux1b
XM_036965638.1 mRNA downstream 22023 42666657 ~ 42796336 (+) False cux1b
XM_036965639.1 mRNA downstream 22023 42666657 ~ 42796336 (+) False cux1b
XM_036965640.1 mRNA downstream 22023 42666657 ~ 42796336 (+) False cux1b
TU2383238 other upstream 382779 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 532380 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 631424 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1137243 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1431644 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 418654 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 887636 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1087761 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1473589 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1763419 44408053 ~ 44410050 (+) True G2085969

Expression Profile