RNA id: TU2383642


Basic Information

Item Value
RNA id TU2383642
length 257
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2084517
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42662689 ~ 42662945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacatcagctgatatcacaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagtatggtggctaggaaaaactccctagaaaggccaaaacctaggaaacaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccaggtggatattataacagaacatggccaagatgttcaaatgttcataaatgacctgcatggtcgaataataataaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383620 lncRNA upstream 18055 42644416 ~ 42644634 (+) True G2084497
TU2383616 lncRNA upstream 21814 42640645 ~ 42640875 (+) True G2084493
TU2383615 lncRNA upstream 24462 42638005 ~ 42638227 (+) True G2084492
TU2383609 lncRNA upstream 31908 42630568 ~ 42630781 (+) True G2084486
TU2383564 lncRNA upstream 59853 42601015 ~ 42602836 (+) True G2084448
TU2383657 lncRNA downstream 12183 42675128 ~ 42675671 (+) True G2084530
TU2383663 lncRNA downstream 34989 42697934 ~ 42699907 (+) True G2084536
TU2383651 lncRNA downstream 136757 42799702 ~ 42801989 (+) True G2084525
TU2383652 lncRNA downstream 137744 42800689 ~ 42801521 (+) True G2084526
TU2383706 lncRNA downstream 157384 42820329 ~ 42820671 (+) True G2084575
XM_036965661.1 mRNA upstream 33451 42574582 ~ 42629238 (+) False LOC110508057
XM_036965662.1 mRNA upstream 33451 42574582 ~ 42629238 (+) False LOC110508057
XM_036965660.1 mRNA upstream 33451 42574583 ~ 42629238 (+) True LOC110508057
XM_021588508.2 mRNA upstream 147126 42510819 ~ 42515563 (+) True LOC110508059
XM_021587166.2 mRNA upstream 159216 42502542 ~ 42503473 (+) True LOC110507283
XM_036965642.1 mRNA downstream 3712 42666657 ~ 42795200 (+) False cux1b
XM_036965636.1 mRNA downstream 3712 42666657 ~ 42796336 (+) False cux1b
XM_036965638.1 mRNA downstream 3712 42666657 ~ 42796336 (+) False cux1b
XM_036965639.1 mRNA downstream 3712 42666657 ~ 42796336 (+) False cux1b
XM_036965640.1 mRNA downstream 3712 42666657 ~ 42796336 (+) False cux1b
TU2383238 other upstream 401052 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 550653 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 649697 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1155516 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1449917 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 400343 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 869325 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 1069450 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1455278 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1745108 44408053 ~ 44410050 (+) True G2085969

Expression Profile