RNA id: TU2383760


Basic Information

Item Value
RNA id TU2383760
length 1176
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G2084608
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42887479 ~ 42888954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtggtactcgTTTAGCAAGCAGCGTGACGTCCTGTACAATCTGTCATGAGACATAGAGCAGATTGAAGTTCAAGTTGAGTAAAAACAACTACAGGTTGATTAGAGCTGAGGTGTCTCGATCCCTTCCTGTGTCTGCTGGTGGTCATTTCCTGTTTGTCTTCGTGAAGATCTCGCTTTAAGAACATGAAGGGCAAGTCTGCAAAGAAGGGAAAAGACTGGATcctggaggggaggagaagacagGGCAGGTATGTACCCCTCTGACTACACTGTCTCATTGAGAAGACAGGGCAGGTATGTACCCCTCTGTCTACACTGTCTCATTGAGAAGACAGGGCAGGTATGTACCCCTCTGTCTACACTGTCTCATTGGGTGGTGATCCTGTACAGTTCAACATTAGTACCATCAACTTATTACATTCATATAGCTTACAACCCCATTTGGATGAAGCCAGTAGGCTCTGTAACAGAAAGACTGGTCTCTTACTGTCTGTGGTGTGTTCTGTCTCTCAGGGAGGTCCGAGCTGACACAGCGTATACTGCCCGGCAGAGAAGGACTCACTTCTGAACCCGTCAGTCCTGTGTGTTCCGGGCCTGGAGATTCACCCTTATGGAATACTACTGTCCTGTGGACAGAATCTGGACAGAAACTGGCCCATCTTTAGGACATGGTCCCAATCCTCTGGACAGAAACTGTCCCCTCTCTAGGACATGGTCCCAATCCTCTGGACAGAAACTGGCCCCTCTCTAGGACATGGTCCTATCCTCTGTACAGAAACTGGCCTCTCTCTAGGACATGGTCCCAATCCTCTGGACATAAACTGGCCCCTCTTGGACATGGTCCCAATCCTCTGGACAGAAACTGGGCCCTCTCTAGGACATGGTCCCAATCCTCTGGACATAAACTTGCCCCTCACTAGGACATGGTCCCAATCCTCTGGACATAAACTTGCCCCTCACTAGGACATGGTCCCAATCCTCTGGACATAAACTGACCCCTCTCTAGGACATGGTCCCAATCCTCTGGACATAAACTTGCCCCTCTCTAGGACATGATGGACATCAACAGCAAATGGACAGCAAAGAAAATAAATTCCCCTCTCTGATCTTTGACCCATTCTTCTGGACTAGATCATTTCCCCTCTCTGATCTTTGACCCATTCTTCTGGACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383762 lncRNA upstream 5522 42880777 ~ 42881957 (+) True G2084610
TU2383732 lncRNA upstream 20691 42865224 ~ 42866788 (+) True G2084598
TU2383707 lncRNA upstream 66523 42820694 ~ 42820956 (+) True G2084576
TU2383706 lncRNA upstream 66808 42820329 ~ 42820671 (+) True G2084575
TU2383651 lncRNA upstream 85490 42799702 ~ 42801989 (+) True G2084525
TU2383771 lncRNA downstream 21615 42910569 ~ 42911037 (+) True G2084618
TU2383781 lncRNA downstream 40988 42929942 ~ 43010963 (+) True G2084625
TU2383801 lncRNA downstream 99384 42988338 ~ 42990174 (+) True G2084638
TU2383738 lncRNA downstream 104743 42993697 ~ 42996557 (+) False LOC110508071
TU2383743 lncRNA downstream 104743 42993697 ~ 42996810 (+) False LOC110508071
XM_036965649.1 mRNA upstream 15993 42837573 ~ 42871486 (+) False LOC110508074
XM_036965650.1 mRNA upstream 15995 42837245 ~ 42871484 (+) False LOC110508074
XM_036965646.1 mRNA upstream 15995 42837579 ~ 42871484 (+) False LOC110508074
XM_036965648.1 mRNA upstream 15995 42837580 ~ 42871484 (+) True LOC110508074
XM_036965651.1 mRNA upstream 16569 42837565 ~ 42870910 (+) False LOC110508074
XM_036965670.1 mRNA downstream 2005 42890959 ~ 43078903 (+) False LOC110508072
XM_036965669.1 mRNA downstream 2005 42890959 ~ 43081678 (+) True LOC110508072
XM_036965668.1 mRNA downstream 104740 42993694 ~ 42996463 (+) False LOC110508071
XM_036965042.1 mRNA downstream 202195 43091149 ~ 43092189 (+) True LOC118944686
XM_036965659.1 mRNA downstream 207689 43096643 ~ 43111668 (+) False LOC110508068
TU2383238 other upstream 625842 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 775443 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 874487 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1380306 41506359 ~ 41507173 (+) True LOC110507232
TU2382143 other upstream 1674707 41212204 ~ 41212772 (+) True G2083239
TU2383825 other downstream 174334 43063288 ~ 43064257 (+) True G2084659
TU2384320 other downstream 643316 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 843441 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1229269 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1519099 44408053 ~ 44410050 (+) True G2085969

Expression Profile