RNA id: TU2383826


Basic Information

Item Value
RNA id TU2383826
length 611
lncRNA type intronic
GC content 0.54
exon number 2
gene id G2084660
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43064896 ~ 43065541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgaggtggagactgaatggagactgaggtggagactgaggtggagactgaggtggagacggAGGTGTAGACTGAATGGAGACTGAGGTGGATACTGAGGTGGAGACTGAATGGAGACTGAGGTGTAGACTGAatggagactgaggtggagactgcggtggagacaggtggagagggaggtgaagaCTGATGTGGAGAGTGAAGTGGAGACTGAatggagactgaggtggagagggagatggagacggaggtagagatggagactgaggtggagagggaggtggagactaaattgagacaggtggagacagttggagagggaggtgaagactgaggtggagagggaAGTGGAGACTGAttggagactgaggtggagagggagatggagacggagactgaggtggagactgcggtggagactgaggtggagactGATAAGAGACTGTGGTGGAGAATGAGgtggagactgaggtggagactGAATGGAGACTGAAtggagactgaggtggagactgattggagactgaggtggagagggagatgaagacTGAATGGAGACAGGTGGAGACTTAATGGAGACTGAGGTGAAGACAGGTGGAGACTGaatggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383811 lncRNA upstream 46799 43015481 ~ 43018097 (+) True G2084647
TU2383781 lncRNA upstream 53933 42929942 ~ 43010963 (+) True G2084625
TU2383743 lncRNA upstream 68086 42993697 ~ 42996810 (+) False LOC110508071
TU2383738 lncRNA upstream 68339 42993697 ~ 42996557 (+) False LOC110508071
TU2383746 lncRNA upstream 68339 42993697 ~ 42996557 (+) True LOC110508071
TU2383753 lncRNA downstream 17470 43083011 ~ 43085654 (+) True G2084604
TU2383845 lncRNA downstream 78255 43143796 ~ 43144844 (+) True G2084675
TU2384149 lncRNA downstream 117593 43183134 ~ 43183334 (+) True G2084902
TU2384165 lncRNA downstream 133481 43199022 ~ 43199230 (+) True G2084916
TU2384169 lncRNA downstream 146214 43211755 ~ 43211958 (+) True G2084920
XM_036965668.1 mRNA upstream 68433 42993694 ~ 42996463 (+) False LOC110508071
XM_036965649.1 mRNA upstream 193410 42837573 ~ 42871486 (+) False LOC110508074
XM_036965646.1 mRNA upstream 193412 42837579 ~ 42871484 (+) False LOC110508074
XM_036965648.1 mRNA upstream 193412 42837580 ~ 42871484 (+) True LOC110508074
XM_036965651.1 mRNA upstream 193986 42837565 ~ 42870910 (+) False LOC110508074
XM_036965042.1 mRNA downstream 25608 43091149 ~ 43092189 (+) True LOC118944686
XM_036965659.1 mRNA downstream 31102 43096643 ~ 43111668 (+) False LOC110508068
XM_036965658.1 mRNA downstream 31540 43097081 ~ 43111668 (+) True LOC110508068
XM_036965654.1 mRNA downstream 46256 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA downstream 46256 43111797 ~ 43140821 (+) False LOC110508067
TU2383825 other upstream 639 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 803259 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 952860 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1051904 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1557723 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 466729 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 666854 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 1052682 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1342512 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2421096 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile