RNA id: TU2383845


Basic Information

Item Value
RNA id TU2383845
length 975
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G2084675
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43143796 ~ 43144844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGCGTTGTTTTTATTCTCCTGCTGCACTTGGTAGCCCTGCCTGGTCTGTACAATAATGTCAATTCGATCTTTATTGTCCATTTCTGGACGTGCCTTTTGTGTCTCTCCTGCAACAGTTGCACACACCCCAGGTTCCATCCCAAATTACATACTATTCCCGATATGGTGCACTACTCTTgaacagggcctatagggctctatCTTTTATTAGCATCACTAAATagtatatatttaagcaatacggcccaagggggtgtggtatatggctaatataccacagctaacgtctgttcttaggcacgacgcaacgcagagtgcctgcaTACATctattagccgtggtatattagccatataccacaaatcctgaggtgtcttattgcacttataaactggttaccagcatacacagaacagtaaacaagtagttttgcgtcatacctgtggtatatttaagcaataaggcacgagggggtgtggtatatggccaatataccacggctaagggctgttcttaggcaaaacCGCAACGCACCGCACCGCaatgtgccttattgctgttataaactggttaccaacgtaattaaagcagtaaaaatacatgttttttcatacccgtggtatatggtctgatataccacggctgtcagccaatcagcatgcagGACTCAAACTACCCTGTTTATAATACTAATTTAGGTCATTACCTAAGGTTCAGACTGTAGAACCTTAGGATTGGGTTTGTTTTTTACCCAGAGTTTATACACAGTACTGTGTTTAGGCTGTTACAAATTATTATATATTAAACACCAGGTGGCAGCAGAGAGCTGCTCTGATTTTACAAATCCGTTATCATAAATAACCACCCTGTTACATGCTCTTGGATGACTTTCTCTCCTCAGCCATCTAATAGCCTGGTGGTTAATGCTGGTGAATACAGCCAGGCATTATGGAGTAATTGTTCACTCACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383753 lncRNA upstream 58142 43083011 ~ 43085654 (+) True G2084604
TU2383826 lncRNA upstream 78255 43064896 ~ 43065541 (+) True G2084660
TU2383811 lncRNA upstream 125699 43015481 ~ 43018097 (+) True G2084647
TU2383743 lncRNA upstream 146986 42993697 ~ 42996810 (+) False LOC110508071
TU2383738 lncRNA upstream 147239 42993697 ~ 42996557 (+) False LOC110508071
TU2384149 lncRNA downstream 38290 43183134 ~ 43183334 (+) True G2084902
TU2384165 lncRNA downstream 54178 43199022 ~ 43199230 (+) True G2084916
TU2384169 lncRNA downstream 66911 43211755 ~ 43211958 (+) True G2084920
TU2384172 lncRNA downstream 74162 43219006 ~ 43219267 (+) True G2084923
TU2384174 lncRNA downstream 77602 43222446 ~ 43223063 (+) True G2084925
XM_036965656.1 mRNA upstream 688 43111797 ~ 43143108 (+) True LOC110508067
XM_036965654.1 mRNA upstream 2975 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA upstream 2975 43111797 ~ 43140821 (+) False LOC110508067
XM_036965659.1 mRNA upstream 32128 43096643 ~ 43111668 (+) False LOC110508068
XM_036965658.1 mRNA upstream 32128 43097081 ~ 43111668 (+) True LOC110508068
XM_036965043.1 mRNA downstream 45933 43190777 ~ 43218309 (+) True LOC118944687
XM_036965665.1 mRNA downstream 48671 43193515 ~ 43293841 (+) False LOC110508082
XM_036965664.1 mRNA downstream 71866 43216710 ~ 43293841 (+) False LOC110508082
XM_036965666.1 mRNA downstream 71867 43216711 ~ 43293841 (+) False LOC110508082
XM_021588536.2 mRNA downstream 404408 43549252 ~ 43557059 (+) True LOC110508093
TU2383825 other upstream 79539 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 882159 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 1031760 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1130804 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1636623 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 387426 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 587551 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 973379 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1263209 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2341793 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile