RNA id: TU2384178


Basic Information

Item Value
RNA id TU2384178
length 218
lncRNA type intronic
GC content 0.37
exon number 1
gene id G2084929
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43231660 ~ 43231877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTATAATGCTGAAAATaagatgtgtttttgtttttctgaaCAGAGCCTTTTTTAGGACCATATACGACGTGAACCATTTTAACCTTTTTGTTGGCTCAAGCCTCAAGCTTGATTTCTACCAGCAGTATACAAATGATCTAGAATGTCAAGATCTCTACCAGGATCTGCCTGAAGTTGCCATGTTCTACTGTTCCAACCAAGGCTATATGATTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384175 lncRNA upstream 5301 43226139 ~ 43226359 (+) True G2084926
TU2384174 lncRNA upstream 8597 43222446 ~ 43223063 (+) True G2084925
TU2384172 lncRNA upstream 12393 43219006 ~ 43219267 (+) True G2084923
TU2384169 lncRNA upstream 19702 43211755 ~ 43211958 (+) True G2084920
TU2384165 lncRNA upstream 32430 43199022 ~ 43199230 (+) True G2084916
TU2384162 lncRNA downstream 54029 43285906 ~ 43286743 (+) True G2084913
TU2384157 lncRNA downstream 56049 43287926 ~ 43293506 (+) True LOC110508082
TU2384159 lncRNA downstream 63972 43295849 ~ 43296211 (+) True G2084910
TU2384218 lncRNA downstream 111061 43342938 ~ 43344797 (+) False G2084965
TU2384219 lncRNA downstream 111061 43342938 ~ 43344797 (+) True G2084965
XM_036965043.1 mRNA upstream 13351 43190777 ~ 43218309 (+) True LOC118944687
XM_036965656.1 mRNA upstream 88552 43111797 ~ 43143108 (+) True LOC110508067
XM_036965654.1 mRNA upstream 90839 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA upstream 90839 43111797 ~ 43140821 (+) False LOC110508067
XM_036965658.1 mRNA upstream 119992 43097081 ~ 43111668 (+) True LOC110508068
XM_021588536.2 mRNA downstream 317375 43549252 ~ 43557059 (+) True LOC110508093
XM_036965634.1 mRNA downstream 341459 43573336 ~ 43700703 (+) False usp32
XM_036965635.1 mRNA downstream 341459 43573336 ~ 43700703 (+) True usp32
XM_036965663.1 mRNA downstream 469684 43701561 ~ 43728339 (+) True si:ch211-167j9.5
XM_036965223.1 mRNA downstream 547195 43779072 ~ 43799038 (+) False sult3st1
TU2383825 other upstream 167403 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 970023 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 1119624 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1218668 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1724487 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 300393 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 500518 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 886346 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1176176 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2254760 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile