RNA id: TU2384433


Basic Information

Item Value
RNA id TU2384433
length 2942
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G2085126
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43739139 ~ 43743757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGAGTTCATCTGTAAAAAGGAACTGAAGTGTTTGTTTTAGAATACAACAAATTGATGGGTTAAACCTACAATATTGTTCACTGTATTAGTCACAAGCTCATGACCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCATTGATGTGTAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGTCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATgctgtgtattgatgtgtagatgctgtgtattggccattgatgtatagatgctgtgtattggccaatgatgtatagatgctgtgtattggccattgatgtatagatgatgtgtattggccattgatgtatagatgctgtgtattgatgtgtagATGCTGTGTATTGGCCATTGATGTGTAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCATTGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCAATGATGTATAGATGCTGTGTATTGGCCAATGATGTGTAGATGCTGTGTATTGGCCATTGATGTATAGACGCTGTGTATTGGCCATTGATGTATAGACGCTGTGTATTGGCCATTGATGTATAGACGCTGTGTATTGGCCAATGATGTGTAGACGCTGTGTATTGGCCAATGATGTATAGACGCTGTGTATTGGCCATTGATGTATAGACGCTGTGTATTGGCCATTGATGTATAGACGCTGTGTATTGGCCATTGATGTATAGATGTtgtgtattggccaatgagaggcttttGAAGCCACTGGTCCTCCATATTAGTACAGAAGAAGCAGTCCTCCATATTAGTACAGaagaagcagtcctccataggaatgaatggaattcttcagtatttcaattaacaatGTCTCTCAAGGACAAAAATCACATGTATTTAGGAattttgttgtagtggggacagtaacattagaacttaaaacaaaaaaaattaaggTGTTTAGTTGAATATCTGTGGCAAAAACAAAATGTAGACGTTAATGCATTTCTTTAgcctccattttttttttttacaatggttGTTGACCCATGTTGTTGGCACGTGACTTCAACACAGCGCCCCCTATCAGTCATGGTGTGTATACGTATATAAATCATGGCACATTTGAGTTTAAATTGTCCTACCTTTGTGGTGACACCTGGGTAAAAACATTTTTCTCAGTCTGCGTCCTAAACGACGCACTATCCCCTGGCCGTTGACTACGACGAGGGGGCTGCGGTGACAAAATAATATAGTAGGGTATTCCATGTCTCCTATGGAGAGAGTGACAGTGAGGCACAGTGTATTCTCCTGGTGGTCAGAGCTACACTGGTTCAGATACAAAATAAGTTATCAAAACCCCCaaattaaaatttaaaaaaagacaaaagtaagaaaattaactttaaaaaaaaaaaggaaaaaaaagtgGCGGTTTGTGAGATTTCCAAGATGAAACGTAACTTTTGGAAAAATCTCTGTTCTCTTCTTAGAGAAGTCAAATAAATAGTTAGCTCCTTGGATTGGTGTGAGGGGGGGCTGGTCCCATCCTGGATGcttcttgctgtgtgtgtgtgtgtgtctcagcccAGGCAGGCTCGTGAAGGCCCATAGCTCTGGGCCAGTAGGAAGGTCTGTACCACTTCCTGTGTCTGCTGGGGACTAGTATTAACATCCTCTAGGGCGTCCGCCACAGCAAACTGCCTATCCCGGAGCTGGTTCCAGTTGGACAGGACGTTGTGATACTCAAACACCTTCTCATAGTTCCCTACTGAGTTGTAGAGTTTGATCAGCCCCCGGTAGTCGTACTCCAGACCGCTGTAGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384427 lncRNA upstream 4301 43735857 ~ 43736158 (+) True G2085125
TU2384426 lncRNA upstream 4918 43735316 ~ 43735541 (+) True G2085124
TU2384407 lncRNA upstream 35192 43704798 ~ 43705267 (+) True G2085108
TU2384378 lncRNA upstream 146988 43591180 ~ 43593471 (+) True G2085080
TU2384375 lncRNA upstream 151143 43588805 ~ 43589316 (+) True G2085078
TU2384447 lncRNA downstream 10610 43754367 ~ 43754854 (+) False G2085137
TU2384448 lncRNA downstream 10610 43754367 ~ 43754854 (+) True G2085137
TU2384470 lncRNA downstream 40591 43784348 ~ 43854950 (+) True G2085153
TU2384485 lncRNA downstream 97864 43841621 ~ 43842239 (+) True G2085167
TU2384494 lncRNA downstream 114162 43857919 ~ 43858227 (+) True G2085175
XM_036965663.1 mRNA upstream 12120 43701561 ~ 43728339 (+) True si:ch211-167j9.5
XM_036965634.1 mRNA upstream 39756 43573336 ~ 43700703 (+) False usp32
XM_036965635.1 mRNA upstream 39756 43573336 ~ 43700703 (+) True usp32
XM_021588536.2 mRNA upstream 183400 43549252 ~ 43557059 (+) True LOC110508093
XM_036965666.1 mRNA upstream 446618 43216711 ~ 43293841 (+) False LOC110508082
XM_036965223.1 mRNA downstream 35315 43779072 ~ 43799038 (+) False sult3st1
XM_021588530.2 mRNA downstream 50230 43793987 ~ 43799038 (+) True sult3st1
XM_036964962.1 mRNA downstream 57345 43801102 ~ 43844791 (+) True LOC110508083
XM_036965730.1 mRNA downstream 129369 43873126 ~ 44069585 (+) False LOC110508084
XM_036965732.1 mRNA downstream 129369 43873126 ~ 44069585 (+) False LOC110508084
TU2384422 other upstream 6565 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 207881 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 676202 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1478822 42260523 ~ 42261637 (+) True G2084156
TU2382881 other upstream 1727467 41972828 ~ 42012992 (+) True G2083851
TU2384668 other downstream 374466 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 664296 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1742880 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1785699 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 2053342 45797099 ~ 45798593 (+) True G2087149

Expression Profile