RNA id: TU2384713


Basic Information

Item Value
RNA id TU2384713
length 1102
lncRNA type intronic
GC content 0.52
exon number 2
gene id G2085352
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44199052 ~ 44205726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaccagtaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttctccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctggtctccttccccaccagcaggtaaactccctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttccccaccagcaggtaaacaccctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccactagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaacaccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctggtctccttccccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacccctgtagtctggtctccttcaccaccagtaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctggtctccttccccaccagcaggtaaactccctctgtagtctggtctccttccccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384661 lncRNA upstream 16632 44182643 ~ 44182909 (+) True G2085308
TU2384692 lncRNA upstream 27359 44171283 ~ 44172182 (+) True G2085337
TU2384679 lncRNA upstream 56592 44142537 ~ 44142949 (+) True G2085324
TU2384619 lncRNA upstream 136396 44061807 ~ 44063145 (+) True G2085283
TU2384618 lncRNA upstream 141521 44056743 ~ 44058020 (+) True G2085282
TU2384718 lncRNA downstream 18398 44220778 ~ 44221142 (+) True G2085357
TU2385370 lncRNA downstream 37108 44239488 ~ 44239838 (+) True G2085874
TU2385372 lncRNA downstream 37503 44239883 ~ 44240150 (+) True G2085876
TU2385373 lncRNA downstream 38048 44240428 ~ 44240743 (+) True G2085877
TU2385375 lncRNA downstream 39642 44242022 ~ 44242223 (+) True G2085879
LOC110507242 mRNA upstream 97650 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 101505 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 109326 44088591 ~ 44090215 (+) True zgc:110333
XM_036965738.1 mRNA upstream 129956 44016822 ~ 44069585 (+) False LOC110508084
XM_036965371.1 mRNA downstream 665607 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 665607 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 665609 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 1241525 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 1241526 45443906 ~ 45479066 (+) False usp16
TU2384668 other upstream 80302 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 465647 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 666963 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1135284 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1937904 42260523 ~ 42261637 (+) True G2084156
TU2385505 other downstream 205673 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1284257 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1327076 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1594719 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 2120704 46323084 ~ 46323694 (+) True G2087569

Expression Profile