RNA id: TU2385372


Basic Information

Item Value
RNA id TU2385372
length 268
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2085876
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44239883 ~ 44240150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagtttaaaaaaaataaaaatatttcacctttatttaaccaggtgggctagttgagaacaagttctcatatgcaactgcgacctggcgtGCAATTGTGCAATTGCTATGCTGGCTGCAGGAAGGTCTACCACAGCTGTTGCcggataatttaatgttaatttctctaccataaactgcctccaaatcccttttagagaatttgacaatATGTCCAACctacctcacaaccacagaccaagtgtaaccacaccagcccaggacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385370 lncRNA upstream 45 44239488 ~ 44239838 (+) True G2085874
TU2384718 lncRNA upstream 18741 44220778 ~ 44221142 (+) True G2085357
TU2384710 lncRNA upstream 34157 44199052 ~ 44205726 (+) False G2085352
TU2384713 lncRNA upstream 37503 44199541 ~ 44202380 (+) True G2085352
TU2384661 lncRNA upstream 56974 44182643 ~ 44182909 (+) True G2085308
TU2385373 lncRNA downstream 278 44240428 ~ 44240743 (+) True G2085877
TU2385375 lncRNA downstream 1872 44242022 ~ 44242223 (+) True G2085879
TU2385377 lncRNA downstream 2864 44243014 ~ 44243216 (+) True G2085881
TU2385385 lncRNA downstream 7997 44248147 ~ 44248363 (+) True G2085889
TU2385386 lncRNA downstream 8281 44248431 ~ 44248651 (+) True G2085890
XM_036965396.1 mRNA upstream 7060 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 137992 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 141847 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 149668 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 170298 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 627837 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 627837 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 627839 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 1203755 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 1203756 45443906 ~ 45479066 (+) False usp16
TU2384668 other upstream 120644 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 505989 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 707305 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1175626 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1978246 42260523 ~ 42261637 (+) True G2084156
TU2385505 other downstream 167903 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1246487 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1289306 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1556949 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 2082934 46323084 ~ 46323694 (+) True G2087569

Expression Profile