RNA id: TCONS_00058028


Basic Information

Item Value
RNA id TCONS_00058028
length 3195
lncRNA type intronic
GC content 0.38
exon number 1
gene id XLOC_028472
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5428318 ~ 5441954 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGAGAGCAATGactgaacacaaacactacaACAACATCACTACAAACTAAACCAACAGAGCAAAGTCCCTTACAGGTGAGTCGCGTTACTCTCCATTTCTGCACTTGGTGTGGCTTTTCTTCGCTGTCGGGCTGTAATatctgctgttgactgacattaTGAGTCTGGCACTGAGCTGTCATCTGCTACTGGAGCTCAACTTGACGCCAGTAAAACCGTGTACCTAGGCTGATCTGGTGTCGTTGTTGTCAAAGTTGTTCAGACTAAAAGAGCAGCTCGCTGATGCCGCCTAGTGGAGCGAATGGGATCTGCGCTTTAATGCACATACAAACCCCGCCCCTCACAATGACGTCATTTGCTTCATTGAGTGCAGCGTCTGACATTGTAAGTCTGatatatgcagtctcagcttgcaaatccaagtctgcatgCAGATACTATTGGAGAAAGACTGACCAAATCTGCCTCTTGCAGAATTCACAAGATTTTTTACATCCGCTCATTGCGTTTTCATTCAGCAACAGAAATACTCATAATTTAAAACTTATTGAACGGCTTAATACAATataggattaaaaataaagcagccaGTCATCTTTATAAGGCATTTAGTAAAGGAAatgtgttcatatttttgttgGTAAAATTATCATTTGTGTCTGCGTCAATTAAATCTGTAAGCAATGAAAACATTCTGCATCCCCAATATAAGAGCTCGTCAAACAAGTTCTATGTGTCTTTATTGATGAGTGGCGCATTAATTACCTACAGGCTAATATTCAGGTTTCACATTACATTCGTATTGGTTTGATATTTCCACATTGTTAATCAAGCATTTTAAGACAGAAAATCTCTCCTGCATACAAAGAAAATTACTTTACAGAGAATTTACACATAAAATAGAAAAACTCAGGAATCAGTTGTTTTAATCCACCAGGAATCCAGTTCCCCTCGAGagctctccatgacctctgacctggcttGGTAgatgggccattcttcaactacgagcacttttagccttgtgaagttgagtaaaaaaacttgttcaaaatgaacgtaacatagcctcataagtttaaacactttgtctagttttaagatctgtaagaggacaaacttagataagaagagaaacattttctcgatcgtgaactgaacaaatgtcaattccagcacatctcaatatacagcttataTTTCTAAATGACATAAATGaaggcagtcaaacattgtctaagatcatttttgtttCTAGTTTAACCAAATCTTTACACAATATCAATAATAGTtatacatttgtcagtgaaataaattagttgtgtgctgaattgtacacctgtcacactctaaaactTAATATAATTTGGTtgagagcttattagaaaataaataaactgcatttgtatatgaaatagagcatgaactcatACATTGTGAttacactttaatgtgtgatgagaactttttaaatgtttttaataatgtgtgtggtgatggaaatgacatttcaacagtttattatgaaaataatgaaaaatagcttcaccgattaACTTTGAATTGATACaagcctttcatgtatacaaaacactcttatttaccgtCATTTTGTTTcggttttagatttttttaagtaggtttgattgttagtttgacaaagaaagaggaatttgaacaaaattgtaTACATGTTGGGATAtttgatcaaaggacataaaagtgctcGTAGTTGAAGAACTACCCAGATCCTGAAAACAGAGATTTGACAGACACAGACGCTTCAGCTGAACACATCACTACATTAGGTCATGTTTAACTTCAGTCACTGATCAAAATCATGTCAAAGATTAAAAcctgattcaaataatcataataatagagTCAACAAGAACAGATTTTGATCTTTCCTGGAACAGATGAAGACAGAAAACGACTCGCTTCAACAGGAAGCAGATCTGTGCTCACGATGACCTCAGTTTACTCAAGCTTCGCTGTCATTTGAAGATCCCCATAAAAACTGTGTAATATTTAGCATTTGATGATAAGTCtctattcaataataataatttttttagtttagaCCTCAAGACTTTCTGCTTCCTTTTACACATTAAAATGTTTCTGGTTGTCAGCATCAGTGGAGGAAAATACACAGAACTACAGCTGCGCCACAGGAAGGTGAAATCTCAGTGCTTTACATTTGCTGTGCTAAAGTTCAGGAAAAACATCAACACAAACTTTCAAATCAACACATCTGCAAAggtgtaattcagaaatatctccacaggagggcgaCATGTTTAAATTCATACTATTATGTTTGCAGTGGTGTCATTCACCAAAATCACCACACGAGGGCGAACATTTAGAATTCATCAATTTCGCAGTggtgtaattcagaaatatctccacaggagggAGAAACTTTCCTTATTTTAGAGCGGCAGCAGTGCAGTTCACAAAAATCCCCACAAGAGGgcgaatattttaaattcagtagATTCAAGATTTGCAAAAGTGTAGTTCAGAGAAatctccacaggagggcgcaatatTTGATACATATGTAATATTTGTCTATTAGTCTATTGTTAGATCAGATATTCAGTGTGtaataatgtgtttatttgtgtgttgaCTCTACAGGATCAGTGAAGTGTTGTGGACTGTCAGCCTGTTGAACATAAGCAGAGACGTGTGGACAGACACTGACTGTACTGATGACGATCATCTGCTGCTGCACAGGTGATGTAGATCATGTGTGATTGTGTTTGTCTTGCAcatgtcggttaccatcatttgctttgtggagggtcactcctctacaaagtaaatgatggtaaccgaaacgggtggggaagggacgaaggtccagaatttttatacagttcattttaaattttttggcaggctgtaaagtataacccctgctggacacggctccggaagctccagggggagaccgaactggtatccccccttcttcaggcgcgcctcacactcactcaccattCACACATATCGCAGAGTTCTGGCTGGCATCGAACCAGCAACCCCTGAAACCGTGGGGCAGCGCTCTTACCACAGAGCCACAGATCTCCTTGTCTGAACACTTGCTGGAACTGATGTTGGACTGCTGACCTGTGTGTGAGCTGATTCAATAAAACAAGAATATATGTCAGATCTGAA

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058026 lncRNA downstream 1632 5428318 ~ 5431554 (-) False XLOC_028472
TCONS_00055264 lncRNA downstream 8944 5421746 ~ 5424242 (-) False XLOC_028471
TCONS_00055265 lncRNA downstream 9003 5421746 ~ 5424183 (-) False XLOC_028471
TCONS_00058021 lncRNA downstream 9119 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00058020 lncRNA downstream 9119 5421746 ~ 5424067 (-) False XLOC_028471
TCONS_00058030 lncRNA upstream 5020 5441400 ~ 5441954 (-) True XLOC_028472
TCONS_00058031 lncRNA upstream 16092 5452472 ~ 5455596 (-) False XLOC_028471
TCONS_00055267 lncRNA upstream 17191 5453571 ~ 5455596 (-) False XLOC_028471
TCONS_00055266 lncRNA upstream 17191 5453571 ~ 5455596 (-) False XLOC_028471
TCONS_00055268 lncRNA upstream 17191 5453571 ~ 5458959 (-) False XLOC_028471
TCONS_00055258 mRNA downstream 61547 5362909 ~ 5371639 (-) False XLOC_028470
TCONS_00055261 mRNA downstream 62327 5366312 ~ 5370859 (-) False XLOC_028470
TCONS_00055260 mRNA downstream 62633 5366312 ~ 5370553 (-) False XLOC_028470
TCONS_00055262 mRNA downstream 62718 5367830 ~ 5370468 (-) False XLOC_028470
TCONS_00055259 mRNA downstream 66620 5365754 ~ 5366566 (-) False XLOC_028470
TCONS_00055269 mRNA upstream 61850 5498230 ~ 5538752 (-) True XLOC_028473
TCONS_00055270 mRNA upstream 132308 5568688 ~ 5595237 (-) False XLOC_028475
TCONS_00055271 mRNA upstream 150803 5587183 ~ 5597167 (-) False XLOC_028475
TCONS_00055272 mRNA upstream 151235 5587615 ~ 5597802 (-) True XLOC_028475
TCONS_00055273 mRNA upstream 208871 5645251 ~ 5652030 (-) True XLOC_028476
TCONS_00055263 other downstream 61564 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 500662 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 862381 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 936395 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2747096 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 1000384 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1129273 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1748815 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1785700 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 2243599 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

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