RNA id: TU2385420


Basic Information

Item Value
RNA id TU2385420
length 2554
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G2085911
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44360820 ~ 44363795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGACGAGGTTAGACAACGCCTGAAAAGAAAACACAACCACTAAACCACAGCAGAGATGCCTGTGAAGGCAGACGAGACTGAGACCCAAattaaatgacaccctattccctttatagtgcactacttttaacccaaatggcaccctattccctttatagtgcactacttttaacccaaatggcaccctatttcctttatagtgcactacttttaacccaaatagcaccctattccctttatagtgcactacatttgtccaaaatggcaccctgtctTTGAGCAGGATCCAGTACTGTTATTTAGTCTCGCTACGGTCTCCTCTGCCACTCTAATCGTCATTGTATGCCAATCGTCGTGTCCATTCCAGAAGCTTCCATAACTCGAAACACAGCGTATACCAGACGGGCTTTCAGCTGCCTGTATTCAGTACTCTTACTATGTGGCATTAGCTGCaaatgactgacacacacacacaacaaaacgtATATAAACAAGTAAAAATGCATAATCCCTAGCTGCTTTGATAGAAGACCTATCACACCACAAAGGTATCACAAACCCACTAAAGTCAGGATAGTCAACCAAATGATATATATATTATTCAAGATGGCTTATTTCAGTGTAAATACAATGCCAACAAAGAAATCAATAAATCAACAGCGACGAAACAAACGTGATGACGTCGCAGCgatctgaatgctgattggctgactgccgtggtatatcagaccccgtttaccacgggtatgacaattttttactgctctaattacattggtaaccagtttataataggaaTAAGGAACCTCAGGGGGTTTGTGACATATGGCCAATATGCCACggttaagggctgtgtccaggcactcagcGATGTGTCGtgactaagaacagcccttagccgtggtataatcggccatataccacacctcgtcgtggccttattgcttaaatatattgtgcactactttttaccagagccctatgagtcctggttaaaagtagtgcactatatagggaatggggtgctatttgggatgcaaacactgGTAACTATTTTTCCTGTCCTGTTTGTTTTAAATAGTACACACTCTTATAGTATACACTTTTAAATAGTATACACTCTTATAGTATACACTTTTAAATAGTACACACTCTCATAGTATACACTTTTAAATAGTATACACTCTTATAGTATACACTTTTAAATAGTATACACTCTTATAGTATACACTTTTAAATAGTACACACTCTCATAGTATACACTTTTAAATAGTATACACTCTTATAGTATACACTTTTAAATAGTATACACTCTTATAGTATACACTTTTAAATAGTACACACTCTCATAGTATACACTTTTAAATAGTATACACTCTTATAGTATACACTTTCGGATGGCCAATTGCAAAACATTGTTGGCATTTAAATACAAAATCATAAGCGTTAAATTATATATCAAAAATTGCATGCGTCTTGTGTTTTTATATAAATAGCACACCGATCTTAATGCAATATATATGTAAAATAATATTATTACAAGCCTGTGCACGCTGGAATCAGTGGAGAAGGTAGTACTATTGCTAACTGCATTAGCATTACTGTACCACAAGTAATGCTTTatgttagcatgttagcattACTGTACCACAAGTAAATGCTTTATGTTAGCATTACTGTACCACAAGTAATGCTTTatgttagcatgttagcattACTGTACCACAAGTAAATGCTTTATGTTAGCATTACTGTACCACAAGTAATACTTTatgttagcatgttagcattACTGTAACTCAAGCAATGCTTTATGTTAGCATTACTGTACCACAAGTAATGCTTTATGTTAGCATTACCGTACCACAAGTAATGCTTTATGTTAGCATATTAGCATTACCATATCCCTGTACCACGGTTTCTTTTCAAGTGTTGTAGGTGTCATACCAAGGCTTGGAAAACTAGTGGTGGGTGGATGGACTCAAAATATGAATGATATATACTGTGTAAATGGCAGAATTACgggaactccccccccccccccccaaaaaaaaaaaaatgtccaggTTTTCCTGCATTATTCTTCTCTGATTCCTGAAATCTTCCAACCTGGGAACTTTGGGGAAAGTTAGTGGAATTCTGCAACCCTCATCCAGAGTTACATCATATTAGTTGAACATATATAATCACCTATTCAACAAGGCCCCGACTCGGTTATAGTGGGAAACACCATGCTGCGTTACAGATGATGTTAATATGGTAATCTACTAACTATTGTTAAAGGTGTATGGAAAAAACATAGGAACTCACAAAAGTTGTGATAAATGGGGAAGGGTGGGagggaaaggggggagggggggggcattaGTGGCGTGTGGTTGGTCgacactgaaaaaaaaaaaacggacagTGATTGGTTGATAACACTTGAGGTTGGTAGCCAGCTGGACGTCTGTTTCTGCTGGTATCGAGCGTCAGTAGTAGCAGAGGTCTAATAACAGGACTCGGTATCGTCATTACCCAGGATCAGAGCTGTCCTGCAGGGGATGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385459 lncRNA upstream 2146 44358525 ~ 44358740 (+) True G2085944
TU2385439 lncRNA upstream 63999 44292940 ~ 44296887 (+) True G2085924
TU2385407 lncRNA upstream 70334 44258644 ~ 44290552 (+) True G2085905
TU2385460 lncRNA downstream 884 44364679 ~ 44365516 (+) True G2085945
TU2385511 lncRNA downstream 48648 44412443 ~ 44414303 (+) True G2085970
TU2385516 lncRNA downstream 60056 44423851 ~ 44424709 (+) False G2085973
TU2385517 lncRNA downstream 60056 44423851 ~ 44424709 (+) True G2085973
TU2385519 lncRNA downstream 74872 44438667 ~ 44441755 (+) True G2085974
XM_036965396.1 mRNA upstream 128063 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 258995 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 262850 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 270671 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 291301 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 504192 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 504192 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 504194 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 1080110 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 1080111 45443906 ~ 45479066 (+) False usp16
TU2384668 other upstream 241647 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 626992 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 828308 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1296629 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 2099249 42260523 ~ 42261637 (+) True G2084156
TU2385505 other downstream 44258 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1122842 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1165661 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1433304 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1959289 46323084 ~ 46323694 (+) True G2087569

Expression Profile