RNA id: TU2385525


Basic Information

Item Value
RNA id TU2385525
length 990
lncRNA type intronic
GC content 0.39
exon number 2
gene id G2085979
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44446352 ~ 44447585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAttatacagccatgttaactcagtCTAACATCAttatacagccatgttaactcagtCTAACATCAttatacagccatgttaactcagtCTAACATCAttatacagccatgttaactcagtCTAACATCAttatacagccatgttaactcagtCTAACATCAttatacagccatgttaactcagtCTAACATCATTATACAGCCATGTTAACCCAGTCTAACATCATTATACAACCATGTTAACCCAGTCTAACATCATTATACAGCCATGTTAACCCAGTCTAACATCATTACACAGCCATGTTAACCCAGTCTAACATCATTACACAGCCATGTTAACCCAGTCTAACATCATTACACAGCCATGTTAACCCAGTCTAACATCATtacacagccatgttaactcagtCTAACATTATACAGCCATGTTAACACAGTCTAACATCATTACACAGCCATGTTAACCCAGTCTAACATCATACAGCCATGTTAACCCAGTCTAACATCACACAGCCATGTTAACCCAGTCTAACATCATTACACAGCCATGTTAAACCAGTCTAACATCACACAGCCATGTTAACCCAGTCTAACATTATACAGCCATGTTAACCCAGTCTAACATCACACAGCCATGTTAACCCAGTCTAACATCATcacacagccatgttaactcagtCTAACATCATCACACAGCCATGTTAACCCAGTCTAACATTACACAGCCATGTTAACCCAGTCTAACATCACACAGCCATGTTAACCCAGTCTAACATCATTATACAGCCATGTTAACCCAGACTAACATCATTACACAGCCATGTTAACCCAGTCTAACATTATTATACAGCCATGTTAACCCAGTCTAACATCATTATACAGCCATGTTAACCCAGTCTAACATCAttatacagccatgttaactcagtCTAACATCATTACACAGCCATGTTAACCCAGTCTAACATCATTACACAGCCATGTTAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385524 lncRNA upstream 1324 44444572 ~ 44445028 (+) True G2085978
TU2385519 lncRNA upstream 4597 44438667 ~ 44441755 (+) True G2085974
TU2385522 lncRNA upstream 5534 44439755 ~ 44440818 (+) True G2085976
TU2385516 lncRNA upstream 21643 44423851 ~ 44424709 (+) False G2085973
TU2385517 lncRNA upstream 21643 44423851 ~ 44424709 (+) True G2085973
TU2385534 lncRNA downstream 17971 44465556 ~ 44466503 (+) True G2085987
TU2385543 lncRNA downstream 29002 44476587 ~ 44477255 (+) True G2085995
TU2385558 lncRNA downstream 54801 44502386 ~ 44504169 (+) True G2086009
TU2385572 lncRNA downstream 66237 44513822 ~ 44514178 (+) True G2086017
TU2385616 lncRNA downstream 131921 44579506 ~ 44580331 (+) True G2086055
XM_036965396.1 mRNA upstream 213529 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 344461 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 348316 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 356137 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 376767 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 420402 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 420402 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 420404 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 996320 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 996321 45443906 ~ 45479066 (+) False usp16
TU2385505 other upstream 36302 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 327113 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 712458 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 913774 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1382095 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 1039052 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1081871 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1349514 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1875499 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 2046337 46493922 ~ 46496887 (+) False G2087592

Expression Profile