RNA id: TU2386045


Basic Information

Item Value
RNA id TU2386045
length 260
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2086352
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44800389 ~ 44800648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGGTTCCTAAAGCCTTACCAAACGGTTCCTAAAGCCTTAAAATAAACAAGAACATCAGAGATACTGATGATAAGGAGACAACATAGTAAACAATTCCCTTCACATGCAGAGCCCTCTTATTCAGAGAATCAAACTATGAAACGGCAGAAACACTCATTTGAGAACCACAGTATGTCCTTTGATTTTCTGAATAACATTCTGTTCACTTAGTTCAGGGTGAATGGGTTTAAAGTGGTGCTACGGCAGGGAAGACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386043 lncRNA upstream 1146 44799042 ~ 44799243 (+) True G2086350
TU2386035 lncRNA upstream 7042 44793042 ~ 44793347 (+) True G2086342
TU2386031 lncRNA upstream 7511 44791934 ~ 44792878 (+) True G2086339
TU2385744 lncRNA upstream 56539 44742408 ~ 44743850 (+) True G2086129
TU2385728 lncRNA upstream 87468 44711520 ~ 44712921 (+) False G2086117
TU2386050 lncRNA downstream 6581 44807229 ~ 44814957 (+) True G2086353
TU2386078 lncRNA downstream 20073 44820721 ~ 44820968 (+) True G2086358
TU2386085 lncRNA downstream 29449 44830097 ~ 44831083 (+) True G2086364
TU2386098 lncRNA downstream 58519 44859167 ~ 44859588 (+) True G2086376
TU2386123 lncRNA downstream 97996 44898644 ~ 44900954 (+) False G2086395
XM_036965396.1 mRNA upstream 567566 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 698498 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 702353 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 710174 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 730804 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 67339 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 67339 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 67341 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 643257 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 643258 45443906 ~ 45479066 (+) False usp16
TU2385505 other upstream 390339 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 681150 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1066495 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1267811 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1736132 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 685989 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 728808 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 996451 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1522436 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1693274 46493922 ~ 46496887 (+) False G2087592

Expression Profile