RNA id: TU2386050


Basic Information

Item Value
RNA id TU2386050
length 2499
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G2086353
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44807229 ~ 44814957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAACTGgggtaacgctcattccttcaacgataaatgcgaatccgaccatcacccctggggAGACataaccacgactcgtcagtgaagagcactttttgccagtcctgtcgggcccagcgacgatgggtttgtgcccaaaggcgatgttgttgccggtgatgtctggtgaggacctgccttacaacaggccttacaagccctcagtccagcctctctcagcctattgcggacagtctgagcactgatggagggattgtgtgttcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccgatcctgtgctggtgttgttacacgtggtctgccactgcgaggacaatcagctgtctgtcctgtctccctgtagcgccatCTTAgccgtctcacagtacggacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcaccttcacgcagatgagcagggaccctgggcatctttcttttggtgtttttcagagtcagtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccgactgtaagctgttagtgtcttaatgatcgTTCCACAGGTTTAtggttcattaattgttcatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaagttatttgtatttttacaaattacctttgaaagacagggtcctgaaaagtggcatttctttttttgctgagtttaaatacattacatacatacggTCCACGCAGTGATTATATTTGCACTCGGGGCCATACTAGAGATCTGGCAATACACCTGTATTAATATAATATCTCTAtattctgtgtgttctgtgttctatgtgttctgtgtgttctatgtgttttctgtgttctcTAGGTTGActctgttctgtgtgttctatgtgttttctgtgttctcTGAGTTGACTGTGTTCTATGTATtcacgtcaacagtgaagaggagactccgggatgctggccttctatgcagagttcctctgtcctgtgtctgtgttcttttgcccatcttaatcttttatttttattggccaatctgaactatgactttttctttgcaactctgccttcatgttgagactggtgttttgcgggtacaatttaatgaagctgccagtttagGACTTAGgaagtgtctgtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccggggcctcccactcctctttctattctggttagagacggtgtacgctgttctgtgaagggagtagtacacagcgttgtacgagatcttcagtctcgttgcaatttctcacatggaatagccttcatttctcagaacaagaatagactgacgagtttcagaagaaagttgttttttttctggtcattttgagactgtaatcaaacccacaaatgccgatgctccagatactcaactagtctaaagaaggacagttttattgcttacttaatcagaacaacagttttgaGCTGTGCtaataattgcaaaaggtttttctaatgatcaattcggcttttaaaatgatgaacttagCTAACCcaaagtgccattggaacacaggagtgatggttgctgataatggtcctctgtacacctatgtagatattccataaaaaaatatgcagtttccagctacaatagtcattcacaacattaacaatgtctacactgtgtttctgattaattttaagttattttaatggagaaaaaaatagcttttctttcaaaaacaaggacatttccaagtgaACCCAAATtgttgaacagtagtgtatataccagtacttcataccaccaactgacatctatataccagtacttcataccaccaactgacatctatataccagtacttCATACCAGCAACTGAcatctatataccagtacttCATACCAGCAACTAATCCTCCATCTATGTACCAGTACTTCATACCACCAACTGAcatctatataccagtacttcataccaccaactgacatctatataccagtacttcataccaccaactgacatctatataccagtacttCATACCAGCAACTAATCCTCAATCTATATACCAGTACTTCATACCACCAACTAATCCTCCATCTATACACCAGTACTTCATACCAGCAACTAatcctccatctatataccagtacttCATACCAGCAACTAATCCTCAATCTATATACCAGTACTTCATACCACCAACTAATCCTCCATCTATACACCAGTACTTCATACCAGCAACTAatcctccatctatataccagtacttCATACCAGCAACTAATCCTCCATCTATACACCAGTACTTCATACCAGCAACTAatcctccatctatataccagtacttCATACCAGCAACTAatcctccatctatataccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386045 lncRNA upstream 6581 44800389 ~ 44800648 (+) True G2086352
TU2386043 lncRNA upstream 7986 44799042 ~ 44799243 (+) True G2086350
TU2386035 lncRNA upstream 13882 44793042 ~ 44793347 (+) True G2086342
TU2386031 lncRNA upstream 14351 44791934 ~ 44792878 (+) True G2086339
TU2385744 lncRNA upstream 63379 44742408 ~ 44743850 (+) True G2086129
TU2386078 lncRNA downstream 5764 44820721 ~ 44820968 (+) True G2086358
TU2386085 lncRNA downstream 15140 44830097 ~ 44831083 (+) True G2086364
TU2386098 lncRNA downstream 44210 44859167 ~ 44859588 (+) True G2086376
TU2386123 lncRNA downstream 83687 44898644 ~ 44900954 (+) False G2086395
TU2386124 lncRNA downstream 83687 44898644 ~ 44901027 (+) True G2086395
XM_036965396.1 mRNA upstream 574406 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 705338 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 709193 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 717014 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 737644 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 53030 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 53030 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 53032 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 628948 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 628949 45443906 ~ 45479066 (+) False usp16
TU2385505 other upstream 397179 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 687990 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1073335 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1274651 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1742972 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 671680 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 714499 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 982142 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1508127 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1678965 46493922 ~ 46496887 (+) False G2087592

Expression Profile