RNA id: TU2386130


Basic Information

Item Value
RNA id TU2386130
length 274
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2086401
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44907365 ~ 44927212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaaagataattacttgacacattggaaagaattaacaaaaaaacagagcaaactataatgctatttggccctaaacagagagtacacagcggcagaatacctgaccactgtgactgacccaaaattaaggaaagctttgactatgtacagactcagtgagcatagccttgctattgagaaaggccgccgtaggcagacatggctctcaagagaagacaggctatgtgctcactgagtctgtacatagtcaaagctttccttaattttgggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386124 lncRNA upstream 6338 44898644 ~ 44901027 (+) True G2086395
TU2386123 lncRNA upstream 6411 44898644 ~ 44900954 (+) False G2086395
TU2386098 lncRNA upstream 47777 44859167 ~ 44859588 (+) True G2086376
TU2386085 lncRNA upstream 76282 44830097 ~ 44831083 (+) True G2086364
TU2386078 lncRNA upstream 86397 44820721 ~ 44820968 (+) True G2086358
TU2386149 lncRNA downstream 12713 44939925 ~ 44940341 (+) True G2086414
TU2386150 lncRNA downstream 13038 44940250 ~ 44941850 (+) True G2086415
TU2386165 lncRNA downstream 44248 44971460 ~ 44972470 (+) True G2086428
TU2386169 lncRNA downstream 53911 44981123 ~ 44981953 (+) True G2086431
TU2386174 lncRNA downstream 64279 44991491 ~ 44991937 (+) True G2086436
XM_036965396.1 mRNA upstream 674542 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 805474 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 809329 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 817150 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 837780 44030564 ~ 44069585 (+) True LOC110508084
XM_036965702.1 mRNA downstream 516693 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 516694 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 516694 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 517368 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 517368 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 497315 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 788126 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1173471 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1374787 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1843108 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 559425 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 602244 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 869887 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1395872 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1566710 46493922 ~ 46496887 (+) False G2087592

Expression Profile