RNA id: TU2386169


Basic Information

Item Value
RNA id TU2386169
length 328
lncRNA type intronic
GC content 0.55
exon number 2
gene id G2086431
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44981123 ~ 44981953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttagagtgtagaggttggcagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttagagtgtagaggttggcagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttagagtgtagaggttggcagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttagagtgtagaggcggcagggtagcctagtggttagagtgtagaggcggcagggtagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386165 lncRNA upstream 8653 44971460 ~ 44972470 (+) True G2086428
TU2386150 lncRNA upstream 39273 44940250 ~ 44941850 (+) True G2086415
TU2386149 lncRNA upstream 40782 44939925 ~ 44940341 (+) True G2086414
TU2386130 lncRNA upstream 53911 44907365 ~ 44927212 (+) True G2086401
TU2386174 lncRNA downstream 9538 44991491 ~ 44991937 (+) True G2086436
TU2386241 lncRNA downstream 106014 45087967 ~ 45088755 (+) True G2086498
TU2386245 lncRNA downstream 113326 45095279 ~ 45095673 (+) True G2086502
TU2386256 lncRNA downstream 127598 45109551 ~ 45109902 (+) True G2086509
TU2386283 lncRNA downstream 161969 45143922 ~ 45146692 (+) False G2086526
XM_036965396.1 mRNA upstream 748300 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 879232 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 883087 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 890908 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 911538 44030564 ~ 44069585 (+) True LOC110508084
XM_036965702.1 mRNA downstream 461952 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 461953 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 461953 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 462627 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 462627 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 571073 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 861884 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1247229 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1448545 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1916866 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 504684 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 547503 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 815146 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1341131 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1511969 46493922 ~ 46496887 (+) False G2087592

Expression Profile