RNA id: TU2386256


Basic Information

Item Value
RNA id TU2386256
length 329
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2086509
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45109551 ~ 45109902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacataccacacacacacacacacacacacatacacacacacatacacacacatatacatacacacacacacacacacacatacacacacatatacatacacacgtaTATGTAAGGagcattggactagtaaccaaaatggTTGCAAGATCgattcccccgagctgacaaggtaaattcattctgcccctgaacaaggcagttaacctactgttcctagaccgtcattgtaaatatgattttgttctttaactgacttgcctagttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386245 lncRNA upstream 13878 45095279 ~ 45095673 (+) True G2086502
TU2386241 lncRNA upstream 20796 45087967 ~ 45088755 (+) True G2086498
TU2386174 lncRNA upstream 117614 44991491 ~ 44991937 (+) True G2086436
TU2386169 lncRNA upstream 127598 44981123 ~ 44981953 (+) True G2086431
TU2386165 lncRNA upstream 137081 44971460 ~ 44972470 (+) True G2086428
TU2386283 lncRNA downstream 34020 45143922 ~ 45146692 (+) False G2086526
TU2386288 lncRNA downstream 34020 45143922 ~ 45146692 (+) False G2086526
TU2386290 lncRNA downstream 35677 45145579 ~ 45146692 (+) True G2086526
TU2386298 lncRNA downstream 58455 45168357 ~ 45170831 (+) False G2086532
TU2386297 lncRNA downstream 58898 45168800 ~ 45170831 (+) True G2086532
XM_036965396.1 mRNA upstream 876728 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1007660 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 1011515 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 1019336 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 1039966 44030564 ~ 44069585 (+) True LOC110508084
XM_036965702.1 mRNA downstream 334003 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 334004 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 334004 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 334678 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 334678 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 699501 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 990312 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1375657 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1576973 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2045294 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 376735 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 419554 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 687197 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1213182 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1384020 46493922 ~ 46496887 (+) False G2087592

Expression Profile