RNA id: TU2386312


Basic Information

Item Value
RNA id TU2386312
length 257
lncRNA type intronic
GC content 0.52
exon number 2
gene id G2086545
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45204647 ~ 45204951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcaagaatggtccaccacccaaaggacatccagccaacttcacacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacgcattcaacaccttgtagagtcaacatgggccagcatccctgtggaacgctttccacaccttgtagagtcaacatgggccagcatccctgtggaacgctttccacaccttgtagagtcaacatgggccagcatccctgtggaacgctttcaacaccttgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386298 lncRNA upstream 33816 45168357 ~ 45170831 (+) False G2086532
TU2386297 lncRNA upstream 33816 45168800 ~ 45170831 (+) True G2086532
TU2386283 lncRNA upstream 57955 45143922 ~ 45146692 (+) False G2086526
TU2386288 lncRNA upstream 57955 45143922 ~ 45146692 (+) False G2086526
TU2386290 lncRNA upstream 57955 45145579 ~ 45146692 (+) True G2086526
TU2386323 lncRNA downstream 27036 45231987 ~ 45232576 (+) True G2086555
TU2386337 lncRNA downstream 52008 45256959 ~ 45257479 (+) True G2086563
TU2386341 lncRNA downstream 56805 45261756 ~ 45262232 (+) True G2086566
TU2386350 lncRNA downstream 73682 45278633 ~ 45279057 (+) True G2086573
TU2386107 lncRNA downstream 154261 45359212 ~ 45361689 (+) False cadm2b
XM_036965396.1 mRNA upstream 971824 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1102756 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 1106611 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 1114432 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 1135062 44030564 ~ 44069585 (+) True LOC110508084
XM_036965702.1 mRNA downstream 238954 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 238955 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 238955 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 239629 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 239629 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 794597 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1085408 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1470753 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1672069 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2140390 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 281686 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 324505 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 592148 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1118133 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1288971 46493922 ~ 46496887 (+) False G2087592

Expression Profile