RNA id: TU2386341


Basic Information

Item Value
RNA id TU2386341
length 277
lncRNA type intronic
GC content 0.42
exon number 3
gene id G2086566
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45261756 ~ 45262232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGCATGTAGCCTGTTAACTGTGCAATGCATGTAGTCTGTTAACTGTGCAATGCATGTAGCCTGTTAACTGTGCAACGCATGTAGCCTGTTAACTGTGCAATGCATGTAGCCTGTTAACTGTGCAATGCATGTAGCCTGTTAACTGTGCAATGCATGTAGCCTGTTAACTGTGCAACGCATGTAGCCTGTTAACTGTGCAATGCATGTAGTCTGTTAACTGTGCAATGCATGGTGTGTTTCTATCATCACAATCTTAGTAATTATACTTCTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386337 lncRNA upstream 4277 45256959 ~ 45257479 (+) True G2086563
TU2386323 lncRNA upstream 29180 45231987 ~ 45232576 (+) True G2086555
TU2386312 lncRNA upstream 56805 45204647 ~ 45204951 (+) True G2086545
TU2386298 lncRNA upstream 90925 45168357 ~ 45170831 (+) False G2086532
TU2386297 lncRNA upstream 90925 45168800 ~ 45170831 (+) True G2086532
TU2386350 lncRNA downstream 16401 45278633 ~ 45279057 (+) True G2086573
TU2386107 lncRNA downstream 96980 45359212 ~ 45361689 (+) False cadm2b
TU2386108 lncRNA downstream 96980 45359212 ~ 45361594 (+) True cadm2b
TU2386378 lncRNA downstream 102237 45364469 ~ 45364749 (+) True G2086600
TU2386385 lncRNA downstream 117382 45379614 ~ 45380539 (+) False G2086604
XM_036965396.1 mRNA upstream 1028933 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1159865 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 1163720 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 1171541 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 1192171 44030564 ~ 44069585 (+) True LOC110508084
XM_036965702.1 mRNA downstream 181673 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 181674 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 181674 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 182348 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 182348 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 851706 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1142517 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1527862 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1729178 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2197499 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 224405 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 267224 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 534867 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1060852 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1231690 46493922 ~ 46496887 (+) False G2087592

Expression Profile