RNA id: TU2386385


Basic Information

Item Value
RNA id TU2386385
length 398
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G2086604
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45379614 ~ 45380539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAATACTAGAGGCAATACTAGAGGGAATACTAGAGGGAATACTAGAGGCAATACCAGAGGCAATACTAGAGGGAATACTAGAGGCAATACTAGAGGTAATACTAGAGGGAATACTAGAGGGAATACTAGAGGGAATACTAGAGGCAATACTAGAGGGAATACTAGAGGCAATACTAGAGGCAATACTAGAGGGAATACTAGAGGGAATACTAGAGGCAATACTAGAGGCAATACTAGAGGCAATACTAGAGGGAATACTAGAGGGAATACTAGAGGGAATACTAGAGGCAATACTAGAGGCAATACTAGAGGGAATACTAGAAGGAATACTAGAGGGAATACTAGAGGGAATACTAGAGGGAATACTAGAGGGAATACTAGAGGTAATACTAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386378 lncRNA upstream 14865 45364469 ~ 45364749 (+) True G2086600
TU2386107 lncRNA upstream 17925 45359212 ~ 45361689 (+) False cadm2b
TU2386108 lncRNA upstream 18020 45359212 ~ 45361594 (+) True cadm2b
TU2386350 lncRNA upstream 100557 45278633 ~ 45279057 (+) True G2086573
TU2386341 lncRNA upstream 117382 45261756 ~ 45262232 (+) True G2086566
TU2386414 lncRNA downstream 41394 45421933 ~ 45422531 (+) True G2086630
TU2386418 lncRNA downstream 49510 45430049 ~ 45430323 (+) True G2086634
TU2386427 lncRNA downstream 60223 45440762 ~ 45441212 (+) True G2086643
TU2386428 lncRNA downstream 62327 45442866 ~ 45443086 (+) True G2086644
TU2386457 lncRNA downstream 93329 45473868 ~ 45475843 (+) True G2086658
XM_036965371.1 mRNA upstream 18959 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA upstream 18959 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA upstream 18959 44867989 ~ 45360655 (+) False cadm2b
XM_036965396.1 mRNA upstream 1146791 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1277723 44100049 ~ 44101891 (+) True LOC110507242
XM_036965702.1 mRNA downstream 63366 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 63367 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 63367 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 64041 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 64041 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 969564 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1260375 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1645720 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1847036 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2315357 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 106098 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 148917 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 416560 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 942545 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1113383 46493922 ~ 46496887 (+) False G2087592

Expression Profile