RNA id: TU2386414


Basic Information

Item Value
RNA id TU2386414
length 599
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G2086630
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45421933 ~ 45422531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggcactggtggtactgggccgaggacacgcacaggaagcctggtgcggggagctgctaccggagggctggggtgtggaggtggcacaggatgggttagaccgtgaaggcgtactggagatcttgagagcggtgctggcacaggacgtgcaaggctagggaggtgcacaggaggcctggtacgtgagactggcaccatcttcaccagccgactaacacgcacctcaggacgagtatggagcgctgacccaggtgccatccatgtttaaaacaccaacacagcaactccctcatttctctctcctccaatttccccattaactccttcacagtctctgtttcgctcacctccaacaccggctctggttctggtctcctccttggctcctcacgataaacagggagagttggctcaggtctggctcctgactctgccacactctccctgagccccccccccaagaaatttttggggctgactatggggcctccgtccgcgccgccttgcttgcttcgcaaactccattctcctatatccttccgcgcactgctccatcgaatcccaggcgggctccggcactctccctgggtcgaccgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386385 lncRNA upstream 41394 45379614 ~ 45380539 (+) False G2086604
TU2386386 lncRNA upstream 41394 45379614 ~ 45380539 (+) True G2086604
TU2386378 lncRNA upstream 57184 45364469 ~ 45364749 (+) True G2086600
TU2386107 lncRNA upstream 60244 45359212 ~ 45361689 (+) False cadm2b
TU2386108 lncRNA upstream 60339 45359212 ~ 45361594 (+) True cadm2b
TU2386418 lncRNA downstream 7518 45430049 ~ 45430323 (+) True G2086634
TU2386427 lncRNA downstream 18231 45440762 ~ 45441212 (+) True G2086643
TU2386428 lncRNA downstream 20335 45442866 ~ 45443086 (+) True G2086644
TU2386457 lncRNA downstream 51337 45473868 ~ 45475843 (+) True G2086658
TU2386452 lncRNA downstream 70737 45493268 ~ 45528316 (+) False mtus2b
XM_036965371.1 mRNA upstream 61278 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA upstream 61278 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA upstream 61278 44867989 ~ 45360655 (+) False cadm2b
XM_036965396.1 mRNA upstream 1189110 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 1320042 44100049 ~ 44101891 (+) True LOC110507242
XM_036965702.1 mRNA downstream 21374 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 21375 45443906 ~ 45479066 (+) False usp16
XM_036965699.1 mRNA downstream 21375 45443906 ~ 45479066 (+) False usp16
XM_036965700.1 mRNA downstream 22049 45444580 ~ 45479066 (+) False usp16
XM_036965701.1 mRNA downstream 22049 45444580 ~ 45479066 (+) True usp16
TU2385505 other upstream 1011883 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1302694 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1688039 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1889355 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 2357676 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 64106 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 106925 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 374568 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 900553 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1071391 46493922 ~ 46496887 (+) False G2087592

Expression Profile