RNA id: TU2386491


Basic Information

Item Value
RNA id TU2386491
length 294
lncRNA type intronic
GC content 0.46
exon number 1
gene id G2086691
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45537910 ~ 45538203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacagagatgcatacaaagctctccctcgccctccatttggaaaatctgaccataattctatcctcctgattcctgcttacaagcaaaaactaaagcaggaagtaccagtgacttgctcaatacggaaATGCGGATaatgcggatgctacgctacaggactgttttgctagcacagactggaatatgttccggcattcatccaatggcattgaggagtacaccacctcagtcaccggcttcatcaataagtgcatcgatgacatcattcccacagtgaccatacgtacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386488 lncRNA upstream 4923 45532761 ~ 45532987 (+) True G2086688
TU2386452 lncRNA upstream 9594 45493268 ~ 45528316 (+) False mtus2b
TU2386478 lncRNA upstream 23369 45514231 ~ 45514541 (+) True G2086678
TU2386468 lncRNA upstream 40568 45495595 ~ 45497342 (+) True G2086668
TU2386457 lncRNA upstream 62067 45473868 ~ 45475843 (+) True G2086658
TU2386494 lncRNA downstream 4214 45542417 ~ 45542652 (+) True G2086694
TU2386495 lncRNA downstream 4783 45542986 ~ 45543379 (+) True G2086695
TU2386503 lncRNA downstream 54993 45593196 ~ 45593500 (+) True G2086700
TU2386504 lncRNA downstream 60973 45599176 ~ 45599513 (+) True G2086701
TU2386505 lncRNA downstream 62251 45600454 ~ 45600725 (+) True G2086702
XM_021588547.2 mRNA upstream 50201 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 50201 45480331 ~ 45487709 (+) False LOC110508103
XM_036965699.1 mRNA upstream 58844 45443906 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 164962 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 238816 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 665394 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 813792 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 837116 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 7971 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 50173 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1127860 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1418671 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1804016 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 258896 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 784881 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 955719 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 955719 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 955719 46493922 ~ 46496887 (+) False G2087592

Expression Profile