RNA id: TU2386504


Basic Information

Item Value
RNA id TU2386504
length 338
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2086701
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45599176 ~ 45599513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTGAAACGGTTCCATGTGTCTGTATGAAGGCTTAATGGTGTTACCTACAGTGTGTTTCAGTTACATACCGTATTCAGTGGTTGTTTACAATCAGACATTGTAATACAGGATGTGTAGCGTGTAGCATCTATGCTTGGTGGACCGTAATGGTCTAATCGCCCAGATACCTCTGCTAGGTTAgcactgagttacagtaatatcCCCCAGATACCTCTGCTAGGTTAgcactgagttacagtaatatcCCCCAGATACCTCTGCTAGGTTAGCACTGAGTTACTGTAATATCCCCCCAGATACCTCTGCTAGGTTAGCACTGAGTTACTGTAATATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386503 lncRNA upstream 5676 45593196 ~ 45593500 (+) True G2086700
TU2386495 lncRNA upstream 55797 45542986 ~ 45543379 (+) True G2086695
TU2386494 lncRNA upstream 56524 45542417 ~ 45542652 (+) True G2086694
TU2386491 lncRNA upstream 60973 45537910 ~ 45538203 (+) True G2086691
TU2386488 lncRNA upstream 66189 45532761 ~ 45532987 (+) True G2086688
TU2386505 lncRNA downstream 941 45600454 ~ 45600725 (+) True G2086702
TU2386507 lncRNA downstream 2359 45601872 ~ 45602081 (+) True G2086704
TU2386508 lncRNA downstream 3958 45603471 ~ 45603673 (+) True G2086705
TU2386515 lncRNA downstream 11338 45610851 ~ 45611779 (+) True G2086709
TU2386517 lncRNA downstream 14737 45614250 ~ 45614453 (+) True G2086710
XM_021588547.2 mRNA upstream 111467 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 111467 45480331 ~ 45487709 (+) False LOC110508103
XM_036965699.1 mRNA upstream 120110 45443906 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 103652 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 177506 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 604084 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 752482 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 775806 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 69237 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 111439 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1189126 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1479937 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1865282 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 197586 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 723571 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 894409 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 894409 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 894409 46493922 ~ 46496887 (+) False G2087592

Expression Profile