RNA id: TU2386517


Basic Information

Item Value
RNA id TU2386517
length 204
lncRNA type intronic
GC content 0.34
exon number 1
gene id G2086710
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45614250 ~ 45614453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttgagatttttagatttgatagggaagctgagaggtcaaatacactgttaagattttctactgccaagtttacaccttcactattacagtggaacgttttacccaggaaattgtctaaaagggatttaatttgttgttgcctaattgttttttggtaggtttccaaactgcattccttccatctatagcatttcttaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386515 lncRNA upstream 2471 45610851 ~ 45611779 (+) True G2086709
TU2386508 lncRNA upstream 10577 45603471 ~ 45603673 (+) True G2086705
TU2386507 lncRNA upstream 12169 45601872 ~ 45602081 (+) True G2086704
TU2386505 lncRNA upstream 13525 45600454 ~ 45600725 (+) True G2086702
TU2386504 lncRNA upstream 14737 45599176 ~ 45599513 (+) True G2086701
TU2386530 lncRNA downstream 19983 45634436 ~ 45634678 (+) True G2086718
TU2386531 lncRNA downstream 20600 45635053 ~ 45635375 (+) True G2086719
TU2386448 lncRNA downstream 49890 45664343 ~ 45673089 (+) False G2086653
TU2386447 lncRNA downstream 51698 45666151 ~ 45673089 (+) False G2086653
TU2386449 lncRNA downstream 51698 45666151 ~ 45673089 (+) False G2086653
XM_021588547.2 mRNA upstream 126541 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 126541 45480331 ~ 45487709 (+) False LOC110508103
XM_036965699.1 mRNA upstream 135184 45443906 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 88712 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 162566 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 589144 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 737542 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 760866 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 84311 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 126513 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1204200 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1495011 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1880356 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 182646 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 708631 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 879469 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 879469 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 879469 46493922 ~ 46496887 (+) False G2087592

Expression Profile