RNA id: TU2386530


Basic Information

Item Value
RNA id TU2386530
length 243
lncRNA type intronic
GC content 0.56
exon number 1
gene id G2086718
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45634436 ~ 45634678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATCCTCCTTCCCTGACCCTTCctcatccatcctccctccctcacccttccTCACTCATCCTTCCTCCCTCACCCTTCCTCACtcatccttcctccctcccttaatCTTCCCCACCAATCCTCCTTCCCTCACCCTTCctcatccatcctccctcccttaaTCTTCCTCAcccacccatcctccctcccttagTCTTCCTCATCCATCCTCCTTCCCTCACCCTTCCTCATCCATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386517 lncRNA upstream 19983 45614250 ~ 45614453 (+) True G2086710
TU2386515 lncRNA upstream 22657 45610851 ~ 45611779 (+) True G2086709
TU2386508 lncRNA upstream 30763 45603471 ~ 45603673 (+) True G2086705
TU2386507 lncRNA upstream 32355 45601872 ~ 45602081 (+) True G2086704
TU2386505 lncRNA upstream 33711 45600454 ~ 45600725 (+) True G2086702
TU2386531 lncRNA downstream 375 45635053 ~ 45635375 (+) True G2086719
TU2386448 lncRNA downstream 29665 45664343 ~ 45673089 (+) False G2086653
TU2386447 lncRNA downstream 31473 45666151 ~ 45673089 (+) False G2086653
TU2386449 lncRNA downstream 31473 45666151 ~ 45673089 (+) False G2086653
TU2386446 lncRNA downstream 31585 45666263 ~ 45673089 (+) True G2086653
XM_021588547.2 mRNA upstream 146727 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 146727 45480331 ~ 45487709 (+) False LOC110508103
XM_036965699.1 mRNA upstream 155370 45443906 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 68487 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 142341 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 568919 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 717317 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 740641 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 104497 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 146699 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1224386 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1515197 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1900542 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 162421 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 688406 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 859244 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 859244 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 859244 46493922 ~ 46496887 (+) False G2087592

Expression Profile