RNA id: TU2386531


Basic Information

Item Value
RNA id TU2386531
length 323
lncRNA type intronic
GC content 0.51
exon number 1
gene id G2086719
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45635053 ~ 45635375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGAGGATGAGGCTGGTTGATTGATTTTGGAAGGACTGGTAGTCAGAGGAGAATGGTTATTGTTGGATGGGCTGGTAGTCAGAGCAGGAGGCTGATTGATTGTGGTTAGATGGGCTGGTAGTCAGAGGAGGAGGCTGTTTGATGTTGGATGGACTGGtagtcagaggaggctggttggTTGATGTTGGATGGGCTGATAGTCAGAGGAGGAGGCTGGTTGATTGATGTTGGATGGGCTGGTAGTTTGAGTAGGGGGCTGGTTGACGATGGATGGGCTAGTAGTCAGACGTGGAGGCTGGTTGATTGATTTTGGATGGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386530 lncRNA upstream 375 45634436 ~ 45634678 (+) True G2086718
TU2386517 lncRNA upstream 20600 45614250 ~ 45614453 (+) True G2086710
TU2386515 lncRNA upstream 23274 45610851 ~ 45611779 (+) True G2086709
TU2386508 lncRNA upstream 31380 45603471 ~ 45603673 (+) True G2086705
TU2386507 lncRNA upstream 32972 45601872 ~ 45602081 (+) True G2086704
TU2386448 lncRNA downstream 28968 45664343 ~ 45673089 (+) False G2086653
TU2386447 lncRNA downstream 30776 45666151 ~ 45673089 (+) False G2086653
TU2386449 lncRNA downstream 30776 45666151 ~ 45673089 (+) False G2086653
TU2386446 lncRNA downstream 30888 45666263 ~ 45673089 (+) True G2086653
TU2387037 lncRNA downstream 40806 45676181 ~ 45677370 (+) True G2087136
XM_021588547.2 mRNA upstream 147344 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 147344 45480331 ~ 45487709 (+) False LOC110508103
XM_036965699.1 mRNA upstream 155987 45443906 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 67790 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 141644 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 568222 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 716620 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 739944 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 105114 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 147316 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1225003 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1515814 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1901159 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 161724 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 687709 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 858547 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 858547 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 858547 46493922 ~ 46496887 (+) False G2087592

Expression Profile