RNA id: TU2386446


Basic Information

Item Value
RNA id TU2386446
length 5412
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G2086653
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45664343 ~ 45673089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACTTTACTTTAGAGTTAAATTCACAGTTGGGATGTACTTTACGTAGGACAGTCTTCTGCCTGTATTGGACCATGTCAGACTGCCTCTCTACAATCCTCCCCATCTGACTTCAGACTACCACGCCTCTACTCTCATTTCGCCTCGTCTTTCCTGTTTACATAGAGGATTTACAACAACCCAGAGAATCATGTTGAACTGCTTTACAAAGAGGATTTACAACAACTCAGAATCATGTTGAACTGCTTTACATAGAGGATTTACAACAACCCAGAGAATCATGTTGAACTGCTTTACATAGAGGATTTACAACAACTCAGAATCATGTTGAACTGCTTTACATAGAGGATTTACAACAACCCAGAGAATCATGTTGAACTGacaatcaaaatatgttttctctGATGACATTTGTAACATTTGTAACCAAGGATCTCGCTcactgtaaagcatggtggtgtaGCTGTCTTCCTGTTTTGTTCCCGACGACCTGCTTGTGGGGTATCCCCATTCTTAGGGACTCCCACCCACCCAGACGGTCATACAGTATGTCAGTAGGAAAATTAATTGAAGTGGATTGTGTCTAGCGAAAGGTTTGACTAACTGTTGTCAAAGAAGTGCAAGCACACCTCTGGTTGCCTCTTTTTGAAATTAAAGTGTTGCACATGAATATAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATATAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTGGATAGAAGATAGAGACTCTGTGTTTGGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGGATAGAAGATAGATACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAATATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTGTGGTTGATAGAAGATAGAGTGTGGTTGATAGAATATAGAGACTCTGTGGTTGAATAGAAGATGGAGACTGGGGTTGAACAGAAGATAGAGACTCTGTGGTTGATAGAATATAGAGACTGTGGTTGATAGAAGATATAGACTCGGTGGTTGAATAGAAGATAGAGACTCCGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATATAGACTCGGTGGTTGAATAGAAGATAGAGACTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTATGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGTGGTTGAATAGAAGATAGAGACTCTGGTTGATAGAAGATAGAGACTCTGTGGTTGATAGAAGAGACTCTGTGGTGGATAGAAGATAGAGCGCGCCCTGTACTCCCATTCAGGTCCCTTGAAGGAAAAGCCATGTGTAGTGTTCCCACTCCGTACGTCATTAAGCATGATGGATTAATGAGTTCTGAGGCGAACCCTGTGGCATAACATACATGTCCCCTTGAAATACATTGAACATGTGACCTACCACTCTCTGAATGGTACTGACGTGTTGAGAATCACATTGAAAAGGCTAAGGAGTTGATCCAGATTGATGTACGGGTTACCTTAGTATCATAGTTGTTTTCCTGCTGCCCCAGGCCTTAGCACTGATGATGCCTGCATTTATTACGTCTGTATTAGTTAGGTCTGTGATCCTGCAagtggctgtgtttacacaggcagcccattcTGATCTTTAGAacgctgtgtttacacaggcagcccattcTGATCTTTAGAacgctgtgtttacacaggcagcccattcTGATCTTTagtggctgtgtttacacaggcagcccattcTGATCTTTTagtggctgtgtttacacaggcagcccattcTGATCTTTAGTgcctgtgtttacacaggcagcccattcTGATCTTTagtggctgtgtttacacaggcagtccaTTCTGATATTTTGCACTATTATTGACAAATGAACTGATCTGATTGGACAAAAGACAATTAGTGAATAGAATATCAGAATTGGGTTATCCTGTGTAAATTCAGCCAATGATGAGGCAAACCTCCCGGGATACATTTACTGATCTGAAGTGAACGTTCTAGAAGAATGTTCTGGTACCagtctgttatttatttatttactcatTGTAACCATGGTGAATCTACTCTTGTTGTCACTCTCTGTCCAAGTGTACTTATCGTTGCATCTCTTTGCGATcaactcaaaaaaaaaaaaatggatttgcTTTCTTTTTGTGTAGCCTTGCGCCTCTGTGTGAGtcaaaacattttgtttttgtttttgagaTCCACAAGTGACATCTAGGCAGCTGTGGAAAATCCCATCGTGACTTTCATTCTCATTTTTCTCCATCCGACTGGATCTTTTATCGTGTCATAATACTAGCTAACCAGGAAGTCTAgtgtgggagaaaaaaaaaattgttcaaTGGAGTATGATTTATGAATGATTATTCACGATGAATATTGTAAAACAGGAaccattgtattcattgtattgaACTGTGATACCTCTTGTCTCAAATCAGAGATCAATCTCAGGTCTTGAAGGAAATTCACGACTCATAACAGAAAGCCAAGAGACTGCCATTTATtcatttaaacattttatttgacaTTTATTCATaatttttaaatatgttattttaggtttattttgttgttgtggGTTTTTTGTGTTGTGACACAACATATTTAAACCACGTTGTAAAATGTCCACCGGATGTAAAGTATCATAAcagtatttattattttttacttttaaggATATGTTTAACAACACTtagcaatgtaaaaaaataacatAATATTAGTTGCTTCAGAGTTAGATGATGTGGTGTAGAAAACCACCACTTCCCCTTGTACAGAATGTCCTATTTACACTGTGTCAATGTAATCATTTGAAGCAGACTGACACCGATATCTGAATGATGATGATATCTACctagatatagatatagacatAGTAGAACTAGAGTAGTTTGACTGCATGGCTGCAGAGGAGACGATGCCTCCCCAGATACCCTTACCAGAGGTTAGCCCTTTGAGCTAAAAGGCTGATAGCTCAGTAACTGGTTGGTTACATAGGGAAAAGGTCAAGGAAGGTTAACCCTTCAGGCTAAAGGCCGATAGTAACTGGGTTAGTAACTGGTTGGTTACATAGGGAGATTTATCTGAAACGTACTGTTCTGTCAGGTTTGGAAGTGCATTGATTGATCTATGTCTTGCGGACGTGACCATTGTGACCAATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCAAAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCAAAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCAAAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGTACTCTAGAACTCTTTAATGTTCCTTCCATTCTAGAACAGAAGGTTGGGTTCCCAGTAGATGCATATCTAATGAGGGGTTGGTGTCTCACATGTTGATGTTGATACCTTAGTTAATTGCTATTGTTTTACGTGAtattaatattttatattaatttTGTTGTACAGATTGTATGGAATTCTTCTCCAGCACAGGTTCTGCCATGTTGTTGATATGAAAGCATGTCTCTTCAATAAGTGTTTTATTTTgcgttgtttattttttataaagaaCTTGGTTTCATATTTGTTTGGATGGTAGAAGTTAAACATTGTGGTTTTTATTACGAGACACTAATGTCTGTATATGTGGCACTTTGGATTGAAGTATTAAAATATAACGGGGGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2386531 lncRNA upstream 30888 45635053 ~ 45635375 (+) True G2086719
TU2386530 lncRNA upstream 31585 45634436 ~ 45634678 (+) True G2086718
TU2386517 lncRNA upstream 51810 45614250 ~ 45614453 (+) True G2086710
TU2386515 lncRNA upstream 54484 45610851 ~ 45611779 (+) True G2086709
TU2386508 lncRNA upstream 62590 45603471 ~ 45603673 (+) True G2086705
TU2387037 lncRNA downstream 3092 45676181 ~ 45677370 (+) True G2087136
TU2387040 lncRNA downstream 6136 45679225 ~ 45679427 (+) True G2087139
TU2387043 lncRNA downstream 10695 45683784 ~ 45684002 (+) True G2087141
TU2387046 lncRNA downstream 14358 45687447 ~ 45687792 (+) True G2087144
TU2387049 lncRNA downstream 14938 45688027 ~ 45691281 (+) False G2087145
XM_036965045.1 mRNA upstream 1958 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 178554 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 178554 45480331 ~ 45487709 (+) False LOC110508103
XM_036965700.1 mRNA upstream 187197 45444580 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 30076 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 103930 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 530508 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 678906 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 702230 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 136324 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 178526 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1256213 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1547024 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1932369 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 124010 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 649995 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 820833 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 820833 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 820833 46493922 ~ 46496887 (+) False G2087592

Expression Profile