RNA id: TU2387040


Basic Information

Item Value
RNA id TU2387040
length 203
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G2087139
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45679225 ~ 45679427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatatACGCTGTCATTGGTGCAGAAAACACGAAGATGTACATGACACAGTCCTCACTGTACAACAGTggtatgaggtatttgaggtagatgtgttCAGTACCTCTTGGGGTGGAATGTCAAAAGACACAGTCCTCAAGTCCACCTTCACGAAAGTGTCAGTACAGGGTAGTACAAAGAAGATCCCTACAGAGGAGACCGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387037 lncRNA upstream 1855 45676181 ~ 45677370 (+) True G2087136
TU2386448 lncRNA upstream 6136 45664343 ~ 45673089 (+) False G2086653
TU2386447 lncRNA upstream 6136 45666151 ~ 45673089 (+) False G2086653
TU2386449 lncRNA upstream 6136 45666151 ~ 45673089 (+) False G2086653
TU2386446 lncRNA upstream 6136 45666263 ~ 45673089 (+) True G2086653
TU2387043 lncRNA downstream 4357 45683784 ~ 45684002 (+) True G2087141
TU2387046 lncRNA downstream 8020 45687447 ~ 45687792 (+) True G2087144
TU2387049 lncRNA downstream 8600 45688027 ~ 45691281 (+) False G2087145
TU2387052 lncRNA downstream 18376 45697803 ~ 45699728 (+) True G2087145
TU2387075 lncRNA downstream 41453 45720880 ~ 45721268 (+) True G2087154
XM_036965045.1 mRNA upstream 14920 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 191516 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 191516 45480331 ~ 45487709 (+) False LOC110508103
XM_036965700.1 mRNA upstream 200159 45444580 ~ 45479066 (+) False usp16
XM_036965061.1 mRNA downstream 23738 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA downstream 97592 45777019 ~ 45777979 (+) False LOC118944695
XM_036964714.1 mRNA downstream 524170 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 672568 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 695892 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 149286 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 191488 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1269175 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1559986 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 1945331 43732395 ~ 43733894 (+) True G2085122
TU2387070 other downstream 117672 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 643657 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 814495 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 814495 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 814495 46493922 ~ 46496887 (+) False G2087592

Expression Profile