RNA id: TU2387070


Basic Information

Item Value
RNA id TU2387070
length 1495
RNA type TUCP
GC content 0.41
exon number 1
gene id G2087149
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45797099 ~ 45798593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accagacttcatgaggtagtcacctggaatgcatttcaattaacaggtgtgacacgttaaaagttaatttgtggaatttatttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaggtaggggtggtatacagaagatagccctatttggtaaaataccaactccatattatggcaagaacagctcaaataagcaaagagaaatgacaaccatcattactttaagacattaaggtcagtcaatactgAACATTTATTCAAATGCAGTTGcagaaaccatcaagcgttatgatgaaactgtctctcatgaggaacgtcacaggaaaggaagacccagagttacctctgctgcagaggataagttcactagagtttccagcctcagaaattgcagcccaaataaatgcttcacagagatcaagtaacagacacatctcaacatcaattgttcagaggagactgtatgaatcaggccttcatggtcgaattgctgcaaagaaaacactactaaaggacaccaataagaagagacttgcttgggccaagaaacacgagcaatggacattagactggtggaaatctgtcctttggtctgatgagtccaaatttgagatttttggttccaaaccgccgtgtctttgtgagaggcagagtaggtgaacggatgatctctgcatgtgtggttcccaccgtgaagcatggaggaggacgtgtgatggtgctttgctggtgacactgtctgtgatttattatttagaattcaaagcacacttaaccagcatggctaccaaatcaaatcaaatgttattggtcacatggttagcagattttaatgggagtgtagcgaaatgcttgtgcttctagttccgacagtgcagtaataaccaaccaAGTAATCTATCAATACCACAACAACTAgcttatacacacaaatctataAACACACAAATCTATATATGGATAAGTGCAtccaccacagcattctgaagcgatacgccatcccatctggtttgcgcttagtgggactatcatttgttttttaacaggacaatgaccaaacactccaggctgtgtaagggctatttgaccaagaaaaagagtgatggagtgctgtatcagataacctggcctccataGTCACCCAACCTCAAGCCAATTGaaatgatttgggatgagttggaccacagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagactgttgtaaaagcattccaggtgaagctggttgagagaatgccaagagtgtgtaaagctgtcaacaaggcaaagggtggctacttcgaataatctcaaatataaaatatattcacttttctggttactacatgattccatatgtgttatttcatagaaaatagtaaaaaataaagaaaaaccctggaatgagtaggtgtgtccaaacttttgactggtactgtatatgcacacacacgcactcacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387105 lncRNA upstream 19645 45776962 ~ 45777454 (+) True LOC118944695
TU2387075 lncRNA upstream 75831 45720880 ~ 45721268 (+) True G2087154
TU2387052 lncRNA upstream 97371 45697803 ~ 45699728 (+) True G2087145
TU2387049 lncRNA upstream 105818 45688027 ~ 45691281 (+) False G2087145
TU2387046 lncRNA upstream 109307 45687447 ~ 45687792 (+) True G2087144
TU2387062 lncRNA downstream 525 45799118 ~ 45801587 (+) False G2087147
TU2387063 lncRNA downstream 525 45799118 ~ 45801587 (+) False G2087147
TU2387065 lncRNA downstream 525 45799118 ~ 45801587 (+) False G2087147
TU2387058 lncRNA downstream 923 45799516 ~ 45801587 (+) False G2087147
TU2387059 lncRNA downstream 923 45799516 ~ 45801587 (+) False G2087147
XM_036965061.1 mRNA upstream 5304 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 19120 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 132794 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 309390 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 309390 45480331 ~ 45487709 (+) False LOC110508103
XM_036964714.1 mRNA downstream 405004 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 553402 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 576726 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 576726 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 576726 46375319 ~ 46411167 (+) False nek3
TU2386453 other upstream 267160 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 309362 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1387049 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1677860 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 2063205 43732395 ~ 43733894 (+) True G2085122
TU2387599 other downstream 524491 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 695329 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 695329 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 695329 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 695329 46493922 ~ 46496887 (+) False G2087592

Expression Profile