RNA id: TU2387279


Basic Information

Item Value
RNA id TU2387279
length 227
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2087333
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45881328 ~ 45881554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtaAGGTCCTGGGTGTCGTGAGGGTAAAATCaggcgcaggaaacagagagttcaataAAGTGCTTATTTAATGCATACACGGTGAATCACGGTCACCCCACTTTCGGGTGCTCAAACCAAATGTCCCAGACACAGGGAAACGAAAACAGTCTAGCACTAAATACACGAACGCGTTCGTCTGTAGCAAACACCAGGGTTACAATtatcaatcccgcacaaagaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387062 lncRNA upstream 79741 45799118 ~ 45801587 (+) False G2087147
TU2387063 lncRNA upstream 79741 45799118 ~ 45801587 (+) False G2087147
TU2387065 lncRNA upstream 79741 45799118 ~ 45801587 (+) False G2087147
TU2387058 lncRNA upstream 79741 45799516 ~ 45801587 (+) False G2087147
TU2387059 lncRNA upstream 79741 45799516 ~ 45801587 (+) False G2087147
TU2387293 lncRNA downstream 16992 45898546 ~ 45898783 (+) True G2087346
TU2387297 lncRNA downstream 30007 45911561 ~ 45911816 (+) True G2087350
TU2387336 lncRNA downstream 80003 45961557 ~ 45961796 (+) True G2087389
TU2387348 lncRNA downstream 88057 45969611 ~ 45969828 (+) True G2087401
TU2387363 lncRNA downstream 99155 45980709 ~ 45980948 (+) True G2087412
XM_036965061.1 mRNA upstream 89533 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 103349 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 217023 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 393619 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 393619 45480331 ~ 45487709 (+) False LOC110508103
XM_036964714.1 mRNA downstream 322043 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 470441 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 493765 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 493765 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 493765 46375319 ~ 46411167 (+) False nek3
TU2387070 other upstream 82735 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 351389 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 393591 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1471278 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1762089 44118223 ~ 44119239 (+) True G2085314
TU2387599 other downstream 441530 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 612368 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 612368 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 612368 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 612368 46493922 ~ 46496887 (+) False G2087592

Expression Profile