RNA id: TU2387336


Basic Information

Item Value
RNA id TU2387336
length 240
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2087389
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45961557 ~ 45961796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacggatgcaggcaatgaggcagtgatcgctgagatcttggttgaagacagcagaggtgtatttagaggggaagttggttaggatgatatctatgagggtgcccgtgtttaaggctttggggaggtacctggtaggttcattgataatttgtgtgagattaagggcatcaagtttagattgtaggatggctggggtgttaagcatgttccagtttaggtcgcctagcagcacgagctc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387297 lncRNA upstream 49741 45911561 ~ 45911816 (+) True G2087350
TU2387293 lncRNA upstream 62774 45898546 ~ 45898783 (+) True G2087346
TU2387279 lncRNA upstream 80003 45881328 ~ 45881554 (+) True G2087333
TU2387060 lncRNA upstream 159970 45799516 ~ 45801587 (+) False G2087147
TU2387348 lncRNA downstream 7815 45969611 ~ 45969828 (+) True G2087401
TU2387363 lncRNA downstream 18913 45980709 ~ 45980948 (+) True G2087412
TU2387364 lncRNA downstream 22611 45984407 ~ 45984666 (+) True G2087413
TU2387368 lncRNA downstream 34665 45996461 ~ 45996751 (+) True G2087417
TU2387395 lncRNA downstream 78593 46040389 ~ 46055938 (+) True G2087442
XM_036965061.1 mRNA upstream 169762 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 183578 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 297252 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 473848 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 473848 45480331 ~ 45487709 (+) False LOC110508103
XM_036964714.1 mRNA downstream 241801 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 390199 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 413523 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 413523 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 413523 46375319 ~ 46411167 (+) False nek3
TU2387070 other upstream 162964 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 431618 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 473820 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1551507 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 1842318 44118223 ~ 44119239 (+) True G2085314
TU2387599 other downstream 361288 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 532126 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 532126 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 532126 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 532126 46493922 ~ 46496887 (+) False G2087592

Expression Profile