RNA id: TU2387419


Basic Information

Item Value
RNA id TU2387419
length 453
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G2087466
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46120699 ~ 46157420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagacagagagagagagagagagagagagagagagagacagagagacagagagacagagagacagagagacagagagagagagagagagagagagagagagagattaGAATGTGTCAGTACTTAAATGCTAAATCTCGCAATATGGGGTGAATCCTACCTAGGTCCACGCATCAACGTCAATGGGAGACTAAGTGAACACGTTAGCATTAGGTTAGAATTCAGTCCATGAACCCAGTCGGTGTATGAATGAATGagaggatggatgaatgaatgaaaggatggatgaatgaatgagaggatggatgaatgaatgagaggatggatgaatgaatgaaaggatggatgaatgaatgaaaggATGGATGAATGATTGagaggatggatgaatgaatgagaggatggatgaatgaatgagagGATGGATGAATGAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387397 lncRNA upstream 62908 46054048 ~ 46057791 (+) True G2087444
TU2387395 lncRNA upstream 64761 46040389 ~ 46055938 (+) True G2087442
TU2387368 lncRNA upstream 123948 45996461 ~ 45996751 (+) True G2087417
TU2387364 lncRNA upstream 136033 45984407 ~ 45984666 (+) True G2087413
TU2387363 lncRNA upstream 139751 45980709 ~ 45980948 (+) True G2087412
TU2387441 lncRNA downstream 9548 46166968 ~ 46167244 (+) True G2087486
TU2387461 lncRNA downstream 34367 46191787 ~ 46193777 (+) True G2087504
TU2387530 lncRNA downstream 72751 46230171 ~ 46230668 (+) True G2087522
TU2387542 lncRNA downstream 99753 46257173 ~ 46257500 (+) True G2087532
TU2387574 lncRNA downstream 139812 46297232 ~ 46297585 (+) True G2087552
XM_036965061.1 mRNA upstream 328904 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 342720 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 456394 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 632990 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 632990 45480331 ~ 45487709 (+) False LOC110508103
XM_036964714.1 mRNA downstream 46177 46203597 ~ 46349567 (+) False LOC110508109
XR_005039992.1 mRNA downstream 194575 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 217899 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 217899 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 217899 46375319 ~ 46411167 (+) False nek3
TU2387070 other upstream 322106 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 590760 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 632962 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1710649 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 2001460 44118223 ~ 44119239 (+) True G2085314
TU2387599 other downstream 165664 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 336502 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 336502 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 336502 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 336502 46493922 ~ 46496887 (+) False G2087592

Expression Profile