RNA id: TU2387542


Basic Information

Item Value
RNA id TU2387542
length 284
lncRNA type intronic
GC content 0.45
exon number 2
gene id G2087532
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46257173 ~ 46257500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgcttgtctggcCCGTAAGTTGATGTGTTTTGATGGGTTGGTTTGGATGAAGTGGGGCGATTACATTACGAATGAGTTACTCCTCAAttgtatggacacacacacattcattcatgcatgcacacacacacacacacacacacacacacacacacacacacataaTGAAAACAGCCAATCCTAGATGAATAGCTGGTAGATAAATAAAGTAGACCCAAAGCCAGGCTTCCAccatctgtctcctcccccccccaaacaacaacaacaacaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387530 lncRNA upstream 26505 46230171 ~ 46230668 (+) True G2087522
TU2387461 lncRNA upstream 63396 46191787 ~ 46193777 (+) True G2087504
TU2387441 lncRNA upstream 89929 46166968 ~ 46167244 (+) True G2087486
TU2387419 lncRNA upstream 99753 46120699 ~ 46157420 (+) True G2087466
TU2387397 lncRNA upstream 199382 46054048 ~ 46057791 (+) True G2087444
TU2387574 lncRNA downstream 39732 46297232 ~ 46297585 (+) True G2087552
TU2387595 lncRNA downstream 61049 46318549 ~ 46319166 (+) True G2087567
TU2387601 lncRNA downstream 66569 46324069 ~ 46324541 (+) True G2087570
TU2387608 lncRNA downstream 79828 46337328 ~ 46337823 (+) True G2087576
TU2387506 lncRNA downstream 85133 46342633 ~ 46348654 (+) True LOC110508109
XM_036965061.1 mRNA upstream 465378 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 479194 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 592868 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 769464 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 769464 45480331 ~ 45487709 (+) False LOC110508103
XR_005039992.1 mRNA downstream 94495 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 117819 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 117819 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 117819 46375319 ~ 46411167 (+) False nek3
XM_036965252.1 mRNA downstream 117819 46375319 ~ 46411167 (+) False nek3
TU2387070 other upstream 458580 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 727234 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 769436 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1847123 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 2137934 44118223 ~ 44119239 (+) True G2085314
TU2387599 other downstream 65584 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 236422 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 236422 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 236422 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 236422 46493922 ~ 46496887 (+) False G2087592

Expression Profile