RNA id: TU2387574


Basic Information

Item Value
RNA id TU2387574
length 242
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2087552
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46297232 ~ 46297585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGAGTTAGCCTTTAGGGGATATATGGACTGAGTTAGCCTTTAGGCGATATATGGACTGAGTTAGTCTGTAGGGGATATATGGACTGAGTTAGTCTGTAGAGGATATATGGACTGAGTTAGCCTTTAGGGGATATATGGACTGAGTTAGTCTGTAGAGGATATATGGACTGAGTTAGCCTTTAGGGGATATATGGACTAAGCTAGCCTTTAGGGGATATATGGACTAAGCTAGCCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387542 lncRNA upstream 39732 46257173 ~ 46257500 (+) True G2087532
TU2387530 lncRNA upstream 66564 46230171 ~ 46230668 (+) True G2087522
TU2387461 lncRNA upstream 103455 46191787 ~ 46193777 (+) True G2087504
TU2387441 lncRNA upstream 129988 46166968 ~ 46167244 (+) True G2087486
TU2387419 lncRNA upstream 139812 46120699 ~ 46157420 (+) True G2087466
TU2387595 lncRNA downstream 20964 46318549 ~ 46319166 (+) True G2087567
TU2387601 lncRNA downstream 26484 46324069 ~ 46324541 (+) True G2087570
TU2387608 lncRNA downstream 39743 46337328 ~ 46337823 (+) True G2087576
TU2387506 lncRNA downstream 45048 46342633 ~ 46348654 (+) True LOC110508109
TU2387473 lncRNA downstream 51543 46349128 ~ 46351873 (+) False G2087509
XM_036965061.1 mRNA upstream 505437 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 519253 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 632927 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 809523 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 809523 45480331 ~ 45487709 (+) False LOC110508103
XR_005039992.1 mRNA downstream 54410 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 77734 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 77734 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 77734 46375319 ~ 46411167 (+) False nek3
XM_036965252.1 mRNA downstream 77734 46375319 ~ 46411167 (+) False nek3
TU2387070 other upstream 498639 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 767293 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 809495 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1887182 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 2177993 44118223 ~ 44119239 (+) True G2085314
TU2387599 other downstream 25499 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 196337 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 196337 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 196337 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 196337 46493922 ~ 46496887 (+) False G2087592

Expression Profile