RNA id: TU2387491


Basic Information

Item Value
RNA id TU2387491
length 2627
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G2087509
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46349128 ~ 46354481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTATTAGAagaacatcccaaatggcacccgattccctatagAGTgtgttacttttgaccagagccctatggccacTGGGGGATAAtactgcactataaagggaatagagtggCATTTGGAAGGCATCCTAGAGGAGCCACTTGGtgggaggaaagagaagagacaggcctacagactactacagactactatagactactacagactatTACAGGCTACCACAGACTACTACAGGCTACTACACTACCGGTAGAACATTTTagaatacctactcattcaagggttttctttatttttactattttcttcattgtagaataatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaaaaagtgtttaacaaatcacaatatatttaatatttgagattcttcaaatagccaccccttgccttaatgacagctttgcacacgcttggtattctctcaaccagcttcacctggaatgcttttctaacagtcttgaaggagttcccacatatgctgagcacttgttggctgattttccttcactctgaggtccaactcatcccaaaccatctcaatttggttgaggttgaggaattgtggaggccaggttatctgatgcagtactccatcactctccttcttggtcaaatagcccttacacaggctgGAAGTGTGGAgggggtcattatcctgttgaaaaacaactgatagtcccactaagcccaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctagttaagtgtgccttgaattctaaatgaatcacagacagtgtcaccagcaaagcaccatcacacctcctcctccatgcttcacagtgggaaccacacatgcagagatcatccgttcacccacaccgcatctcacaaagaaacggtggttggaagcaaaaatctcaaatttggactcatcagaccaaaggacaaatttccaccggtcaaaTGTTcattacttgtgtttcttggcccaagcaagtctcttcttattattggtgtcctttagtagtggtttctttgcagcaattcgaccatgaaggccggattcacgcagtctcctctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggccgtaatttctgaggctggtaactctaatgaacttatcctctgcagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagacaggtaactctaatgaacgtatcctctgcagcagaggtaactctgggtcttcctttcctgtggtggtcctcatgagagccagtttcatcatagcacttaatggtttttgcgactgcacttaaagaaactttgaaagttcttgaaatgttccgtattgactcatcttcatgtcttaaaacctctctagggtatgtgggacgctaccatcccacctggccaacatacGGGGAAATTGcaaagcgccaaattcaaaaacagaaatactcataataaaaagtgttatacatcagcttaaatattaacttcttgttaatccaaccgttgtgtcagatttcaaataggctttacagtgaaagcataccatgcgattatctgaggacagcgcccagcacacaaaacattacaaacagttaccagccaagtagagaagtaacaaaagtcagaaatagtgataaaatgaatcacttacctttgatgatcttcatatggttgcactcaaaGGACTCCCAGATACACAATAAATGTCTGTTTTGTtctataaagtccttctttatatccaaaacctcagttttgttggcgcgttttgttcagtaatccattgGCTCAAAGTCAGTCACAACAAGCAGACGAAAAATCTAAAAAGTAtcagtaaagttcatagaaacatgtcaaatgatgttgataatcaatcctcaggttgtttttagtcataataatcaataatatttaaaccggacCATAGCTCCGTCAAtataaaagaaaaacaagaaaggcgcgctcTCGATCGGCTCAGCAGCTCTGGGGACTTCCCAGGGTCCACTCACTCAGAGatgtcttactccctcatttttcagaatacaagcctgaaaccatttctaaagactgttgacatctagtggatgccataggaagtgcaatctgaGTCCTAAGTCTTTGGATACTGTATAGGCAGTCAATGGAAAACtgaaaacataaaaaaatcccacttcctggatgttTTTCCTCAGGTttctgcctgccatatcagttctgttataatcacagacattattttaacagttttggtagcagtttactttgggcacgcttttcatccgcaTGTCAAAATACTGTCCCCTAGCCCAGAgaggttaaagtaatgatggaatggattttctccttgcttatttgagctctttCTTgccaataatatggacttggtcttttatcaaatacggctatcttctgtataccaaccctaccttgtcacaacacaactgattggctcaaacgcatcaagaaggaaagaaattccacaaatgaacttttaagaaggcacacctgttaattgaaatgcattccaggtgactacctcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387506 lncRNA upstream 474 46342633 ~ 46348654 (+) True LOC110508109
TU2387608 lncRNA upstream 11305 46337328 ~ 46337823 (+) True G2087576
TU2387601 lncRNA upstream 24587 46324069 ~ 46324541 (+) True G2087570
TU2387595 lncRNA upstream 29962 46318549 ~ 46319166 (+) True G2087567
TU2387574 lncRNA upstream 51543 46297232 ~ 46297585 (+) True G2087552
TU2387472 lncRNA downstream 87 46351960 ~ 46353885 (+) False G2087509
TU2387475 lncRNA downstream 125 46351998 ~ 46354481 (+) False G2087509
TU2387476 lncRNA downstream 125 46351998 ~ 46354481 (+) False G2087509
TU2387477 lncRNA downstream 125 46351998 ~ 46354481 (+) False G2087509
TU2387479 lncRNA downstream 125 46351998 ~ 46353885 (+) False G2087509
XM_036965061.1 mRNA upstream 557333 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 571149 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 684823 45493223 ~ 45664305 (+) False mtus2b
XM_021588547.2 mRNA upstream 861419 45480328 ~ 45487709 (+) False LOC110508103
XM_021588546.2 mRNA upstream 861419 45480331 ~ 45487709 (+) False LOC110508103
XR_005039992.1 mRNA downstream 122 46351995 ~ 46354652 (+) True LOC118944693
XM_036965247.1 mRNA downstream 23446 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 23446 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 23446 46375319 ~ 46411167 (+) False nek3
XM_036965252.1 mRNA downstream 23446 46375319 ~ 46411167 (+) False nek3
TU2387599 other upstream 25434 46323084 ~ 46323694 (+) True G2087569
TU2387070 other upstream 550535 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 819189 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 861391 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1939078 44408053 ~ 44410050 (+) True G2085969
TU2387647 other downstream 142049 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 142049 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 142049 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 142049 46493922 ~ 46496887 (+) False G2087592
TU2388024 other downstream 675246 47027119 ~ 47028563 (+) True G2087865

Expression Profile