RNA id: TU2387613


Basic Information

Item Value
RNA id TU2387613
length 792
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G2087580
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46358506 ~ 46359599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccacccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctcaacccctcccatctatctctgatcaccatccagtccttcagctaccctcaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagcccccctcaacccctcccatctatctctgaacaccatccagtcccatccttcagctcccctcaacccctcccatctatctctgatcaccatccagtccttcagctcccctaaacccctcccatctatctctgatcaccatccagtccttcagctcccctaaacccctcccatctatctctgatcaccacccagtcccatacttcagctaccctcaacccctcccatataTCTCTGatcaccatccagtccttcagctcccctaaACCCCTCCCATATATCTCTgatcaccacccagtcccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387480 lncRNA upstream 4025 46349128 ~ 46354481 (+) False G2087509
TU2387501 lncRNA upstream 4025 46349128 ~ 46354481 (+) False G2087509
TU2387475 lncRNA upstream 4025 46351998 ~ 46354481 (+) False G2087509
TU2387476 lncRNA upstream 4025 46351998 ~ 46354481 (+) False G2087509
TU2387477 lncRNA upstream 4025 46351998 ~ 46354481 (+) False G2087509
TU2387634 lncRNA downstream 16009 46375365 ~ 46383912 (+) True nek3
TU2387659 lncRNA downstream 75498 46434854 ~ 46435799 (+) True G2087594
TU2387694 lncRNA downstream 83583 46442939 ~ 46454547 (+) True G2087624
TU2387698 lncRNA downstream 87257 46446613 ~ 46447586 (+) True G2087626
TU2387661 lncRNA downstream 93702 46453058 ~ 46497945 (+) True G2087596
XR_005039992.1 mRNA upstream 3854 46351995 ~ 46354652 (+) True LOC118944693
XM_036964714.1 mRNA upstream 8939 46203597 ~ 46349567 (+) False LOC110508109
XM_036965061.1 mRNA upstream 566711 45703165 ~ 45791795 (+) True foxo1a
XR_005039993.1 mRNA upstream 580527 45777019 ~ 45777979 (+) False LOC118944695
XM_036965045.1 mRNA upstream 694201 45493223 ~ 45664305 (+) False mtus2b
XM_036965247.1 mRNA downstream 15963 46375319 ~ 46411167 (+) False nek3
XM_036965250.1 mRNA downstream 15963 46375319 ~ 46411167 (+) False nek3
XM_036965251.1 mRNA downstream 15963 46375319 ~ 46411167 (+) False nek3
XM_036965252.1 mRNA downstream 15963 46375319 ~ 46411167 (+) False nek3
XM_036965253.1 mRNA downstream 15963 46375319 ~ 46411167 (+) False nek3
TU2387599 other upstream 34812 46323084 ~ 46323694 (+) True G2087569
TU2387070 other upstream 559913 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 828567 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 870769 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 1948456 44408053 ~ 44410050 (+) True G2085969
TU2387647 other downstream 134566 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 134566 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 134566 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 134566 46493922 ~ 46496887 (+) False G2087592
TU2388024 other downstream 667763 47027119 ~ 47028563 (+) True G2087865

Expression Profile