RNA id: TU2387698


Basic Information

Item Value
RNA id TU2387698
length 921
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G2087626
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46446613 ~ 46447586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtggactcactaaacagagaacatccctggtcatccctacagcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgtctctgatctggaggactcactaaacagagaacatctctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatctctattgcctctgatctggcagactcactaaacagagaacatccctggtcatccctactgcctctgatctggtggactcactaaacagagaacatccctggtcatctctactgcctctgatctggaggactcactaaacagagaacatcccaggtcatccctactgcctctgatctggaggactaactaaacagagaacatccctggtcatcccttctgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacgtccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatctctggtcatccctactgcctctgatctggaggactcactaaacagagatcatccctggtcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggcggactcactaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387659 lncRNA upstream 10814 46434854 ~ 46435799 (+) True G2087594
TU2387634 lncRNA upstream 62701 46375365 ~ 46383912 (+) True nek3
TU2387614 lncRNA upstream 87014 46358506 ~ 46359599 (+) True G2087580
TU2387613 lncRNA upstream 87257 46358506 ~ 46359356 (+) False G2087580
TU2387503 lncRNA upstream 92728 46351998 ~ 46353885 (+) True G2087509
TU2387661 lncRNA downstream 5472 46453058 ~ 46497945 (+) True G2087596
TU2387712 lncRNA downstream 10942 46458528 ~ 46461373 (+) True G2087633
TU2387714 lncRNA downstream 12372 46459958 ~ 46462351 (+) True G2087635
TU2387722 lncRNA downstream 38204 46485790 ~ 46487163 (+) True G2087643
TU2387652 lncRNA downstream 46336 46493922 ~ 46499497 (+) True G2087592
XM_036965251.1 mRNA upstream 35446 46375319 ~ 46411167 (+) False nek3
XM_036965783.1 mRNA downstream 125635 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA downstream 125635 46573221 ~ 46576187 (+) True cysltr2b
XM_036965065.1 mRNA downstream 132034 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 143996 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 180311 46627897 ~ 46758317 (+) False fndc3a
TU2387599 other upstream 122919 46323084 ~ 46323694 (+) True G2087569
TU2387070 other upstream 648020 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 916674 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 958876 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 2036563 44408053 ~ 44410050 (+) True G2085969
TU2387647 other downstream 46336 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 46336 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 46336 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 46336 46493922 ~ 46496887 (+) False G2087592
TU2388024 other downstream 579533 47027119 ~ 47028563 (+) True G2087865

Expression Profile