RNA id: TU2387712


Basic Information

Item Value
RNA id TU2387712
length 716
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G2087633
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46458528 ~ 46461373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGAACTGAGATACAGGGTTGAAACTGAAGCACAGTGTTGTAACTGAAGCACAGGGTTGGAACTGTTGCAACTGAGGCCCAGAGTTGGAACTGAGGCCCGGGGTTGGGACTGAGGTCCAGGGTTGAAACTGGGACCGGGATTGGAACTGAGGCCCAGGGTTGGAACTGAGGCCCAGGGTTGGAACTGAGGCCCAGGGTTGGAACTGAGGCCCAGGGTTGGACCTTAGGCACAGTGTTGGAACTGAAGCACAGGGTTGAAACTGAAGCACACGGTTGGAACTGTGGGAACTGAGGTCCAGGGTTGGAGCTGAAGCCCAGAGTTGGAACTGAGGCCCGGGGTTGGGACTGAGGCCCAGGGTTGAAACTGGGACCGGGATTGGAACTGAGGCCCAGGGTTGGAACTGTGGGAACTGAGGCCCAAGGTTAGAATTGAGGCTCGGGTTTGGAACTGAGTCCCGGGGTTGGAAATGAGGCCCAGGGTTGGAACTGAGGCCCGGGTTTGTGACTTTTGGAACTGAGAACTGGTGTTGGGACTGTTGGAACTGAGTACTGGGGTTGGGACTGAGGCCCGGGGTTATAACTGAGGCCCAGGGTTGTAACTGAGGCCCAGAGTTGGAGCTGAGGCCCAGGGTTGGAACTGAGGCCCAGGGTTGTAACTGTGGGAACTGAGGCCCGGGGTTGGAGCTGAGTCCCGGGCTTGGAGCTGAGTCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387694 lncRNA upstream 3981 46442939 ~ 46454547 (+) True G2087624
TU2387698 lncRNA upstream 10942 46446613 ~ 46447586 (+) True G2087626
TU2387659 lncRNA upstream 22729 46434854 ~ 46435799 (+) True G2087594
TU2387634 lncRNA upstream 74616 46375365 ~ 46383912 (+) True nek3
TU2387614 lncRNA upstream 98929 46358506 ~ 46359599 (+) True G2087580
TU2387722 lncRNA downstream 24417 46485790 ~ 46487163 (+) True G2087643
TU2387652 lncRNA downstream 32549 46493922 ~ 46499497 (+) True G2087592
TU2387735 lncRNA downstream 48738 46510111 ~ 46525515 (+) False G2087654
TU2387740 lncRNA downstream 49629 46511002 ~ 46525225 (+) False G2087654
TU2387743 lncRNA downstream 50162 46511535 ~ 46525352 (+) False G2087656
XM_036965251.1 mRNA upstream 47361 46375319 ~ 46411167 (+) False nek3
XM_036965783.1 mRNA downstream 111848 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA downstream 111848 46573221 ~ 46576187 (+) True cysltr2b
XM_036965065.1 mRNA downstream 118247 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 130209 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 166524 46627897 ~ 46758317 (+) False fndc3a
TU2387599 other upstream 134834 46323084 ~ 46323694 (+) True G2087569
TU2387070 other upstream 659935 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 928589 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 970791 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 2048478 44408053 ~ 44410050 (+) True G2085969
TU2387647 other downstream 32549 46493922 ~ 46496887 (+) False G2087592
TU2387649 other downstream 32549 46493922 ~ 46496887 (+) False G2087592
TU2387650 other downstream 32549 46493922 ~ 46496887 (+) False G2087592
TU2387651 other downstream 32549 46493922 ~ 46496887 (+) False G2087592
TU2388024 other downstream 565746 47027119 ~ 47028563 (+) True G2087865

Expression Profile