RNA id: TU2387650


Basic Information

Item Value
RNA id TU2387650
length 2856
RNA type TUCP
GC content 0.49
exon number 2
gene id G2087592
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46493922 ~ 46499497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccgGCATGCGGTGATTAGTGACATAAAACAACCGATTCCTGTGTCAGTGCATTGTCTTGTACGGGACGATATACAACAAAGTGCCTACTGTGAGTTTAGGATTTAAAAATCTCCTCAGGCacacacagtatactgtatactcacAAAACACTTCTTAGACCCACCTGTTTTCAGATACATACACGATACAAAATATCAAAACTAACATCACTGAGATACACAAAGCAATCCGTAGCCTGATATTTCTCAAGTTTAATGAAATAGAGGCCATGGTAGTAAAGTTATCGCTGCCATGAAAACAGATTCATTGGTAGCTACATGTTACACTCTGTTAGCagtcctgttttctctctctctctctcgttctctcgctctcactctctctctctctctctctctctcgctctctctcgttctctctctcgctctctctctctctctctctctcgctctctctctctctctctctctctctctctcgcgttctctcgttctctcgttctctctcactctctctctctctctctctctctctcgttctctcgttctctctctctcacactctctctttctctctctctcgttctctctcactctctctctctcctgtgatcACAATCCATTCCAATTCATATTTTTCAGAAGTTTAATAACTTCTGTCTGGCACAATTGTTGTGCAAAAACAGTTCTAATTCCACAAGGGGATGTTAGTTAGTTATATTAAATTAACATATTAACTAACAGGGGATCAAATAAGACAACCTGTATACTGTAGACTGTCGGGTACATATAGCATGGACAGTCACAGGGGCTTGGTCCATGTTGCAGCCCTGAGATAAACACTGAAATCCTATACGTATGTCCTCTTTCCTTGCTGGTGCCTCAGCCCTCTTCCTCCAAGCCCCTTCCAATGTCTCCAAAGTCTCCCAGAGGCTTGCTGATAATCCATTGTGTTTGATGTTAATCCATTGCGTGTGTAATGTCTGTATGTGTATTTGCATGTATCAATTCAATTCACAAGTCTTAAGTCCAGAACTACAGATAGATAGAACCATTTAGAGACCCTGTGTGCTGCTGCtagcaaccagccagccagtcagttaaccAGTCAACCAGCCATCCAGTGAGCCAGTAAGCCTGCCATTCAGCAAGCCAGTCAGTTAACCAGTCAACCAGCCATCCAGTGAGCCAGTAAGCCTGCCATTCAGCAAGCCAGTCAGTTAACCAGTCAAccagccatccagtcagccagtaaGCCTGCCATTCAGCAAGCCAGTCAGTTAACCAGTCAACCAGCCATCCAGTCAGCCTGccattcagccagccagtcagttaaccagtcaaccagccatccagtcagccagtaaGCCTGCCatacagccagccagtcagttaaccagtcaaccagccatccagtcagccagtaaGCCTGCCatacagccagccagtcagttaaccagtcaaccagccagccagtcagttaaccagtcaaccagccagccagtcagttaaccagtcaaccagccatccagtcagtcagtaagcctgccatacagccagccagtcagctaaccagtcaaccagccagtcagctaaccagtcaaccagccagccagtcagttaaccagtcaaccagccagccagtcagtccctCCACACCCCCCAGTGTCACACAGAAGACTCGGTGTTGCTAAACACCTTGTCTTTCAGTGTCCTCAGGCTGCAGTGGAAGTTGGCGCTGGTCTCACTCTGCAGTGCCTCAGAGAACTTAATGTCGTACGCCtggctgatcgtggacttcctCTTGATAGAGTTCTGGATGGTCTCCGAGGTAAAGTAGTAGATGATCGGGTCAAAACAGCAGTTGGACACAGCAATACAGAGAGCGATAGGATAGATAGTTCGGACTACGGTCTCTGAAGCGCAGCCCTTCAGCGTCCCAGTTCGAACCAGGGCATAGAAGACTAGGTTGACGTTATAAGGGATGAAACAGAAGCAGAAGATGAAGAGATGAACCACGATCATTCGAAGGATCTTGGTTTTGTTGAGTTTCCCCCCGCGGCTGATGGTCTGGGGTCTCCTCAGGGTCTGGAGAACCATGACGGAACATACCACGTTGAGGAGCAAGGGGATCAGGAACCCCACCGTCTCGATGAAGATTACCACCTTGGAGAGGTGGGACTTCCACTGCTTGGATGAGAAGTTCTCGAAACAGAACCGTGCGGTGGAGTGGTTGTGGTGTGGCGATGTGGTCTCCAGTTTAAACCCCGTCGGTAGACTCCCTGCCAACACCAGAACCCAGACCGCCACGCACACCATCTTAGCGTTCCTCTTTGTTCTCAACGCCCGTGACCTGAGCGGGTGAACGATGGCCAGGAACCGATCCACACTAATGCAAGTGAGGAATAGAATACTCCCGTACATGTTGGTATAAAATAATGAGACGGAGAGCTTGCAGAGTATCCCGCCGAACGGCCAGTCCTGGTTAAGGAAGTAGAAGACCCTGAGAGGCAGTGTGAAGACGAAGAGAAGGTCTGACACCACTAGGTTGATCATGTAGGTCGTCGTCTCGTTCCTCAACTTGAGAGTACAGGTGAATATATACATGGCCGCCATGTTAGTGATCAACCCCACAATGAACACCAGGCTGAAGACGGTGCTGTAGAGAGGATACTTAAAGCCATCGTTCTTGGTGCAGTTGGAACTGTCTGAGGAGACGGAGGACGAGTTGAGTTGGTGCAGCAAAGGAGTGATGCTTGATCTGATAATCCCACCGAGACCGTATTTCATCAGGGTGAAGTTGTCTGTCGACATGGCCAGTGGGATCAGGTTGGTATTGTTCATGTTGTTGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387722 lncRNA upstream 6759 46485790 ~ 46487163 (+) True G2087643
TU2387714 lncRNA upstream 31571 46459958 ~ 46462351 (+) True G2087635
TU2387712 lncRNA upstream 32549 46458528 ~ 46461373 (+) True G2087633
TU2387694 lncRNA upstream 39375 46442939 ~ 46454547 (+) True G2087624
TU2387698 lncRNA upstream 46336 46446613 ~ 46447586 (+) True G2087626
TU2387735 lncRNA downstream 13224 46510111 ~ 46525515 (+) False G2087654
TU2387740 lncRNA downstream 14115 46511002 ~ 46525225 (+) False G2087654
TU2387743 lncRNA downstream 14648 46511535 ~ 46525352 (+) False G2087656
TU2387739 lncRNA downstream 19024 46515911 ~ 46525225 (+) False G2087654
TU2387741 lncRNA downstream 19288 46516175 ~ 46517158 (+) True G2087655
XM_036965251.1 mRNA upstream 82755 46375319 ~ 46411167 (+) False nek3
XM_036965783.1 mRNA downstream 76334 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA downstream 76334 46573221 ~ 46576187 (+) True cysltr2b
XM_036965065.1 mRNA downstream 82733 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 94695 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 131010 46627897 ~ 46758317 (+) False fndc3a
TU2387599 other upstream 170228 46323084 ~ 46323694 (+) True G2087569
TU2387070 other upstream 695329 45797099 ~ 45798593 (+) True G2087149
TU2386453 other upstream 963983 45529456 ~ 45529939 (+) True mtus2b
TU2386442 other upstream 1006185 45486637 ~ 45487737 (+) True LOC110508103
TU2385505 other upstream 2083872 44408053 ~ 44410050 (+) True G2085969
TU2388024 other downstream 530232 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 540155 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 1028553 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 1035535 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1357219 47854106 ~ 47864829 (+) True G2088870

Expression Profile