RNA id: TU2387737


Basic Information

Item Value
RNA id TU2387737
length 791
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G2087654
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46510111 ~ 46525515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gataacaggagatatcaggagtcctctagctatagaatcacccctggaGATAAcaggagatatcaggagtcctctagctatagaatcacccctggagatgacaggagatatcaggagtcctctagctatagaatcaccccaggagataacaggatatatcaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtccACTAGgtatagaatcacccctggagataacaggagtcctttagttatagaatcacccctggagataacaggagtcctctagctatagaatcacccctcgAGATAACCGGAGATACCAGGAGTCCTCTAGTTATATAATCGCCACTGGAGATATCAGGTGTCCTCTAGCTATAGAtccacccctggagataacaggagtcctctagctatataATCACtccaggagataacaggagtcgtctagctatagaatcacccctggagataacaggagtcctctagttatagaatcacccctggaggtatcaggagataacaggagtcctctagctaaataatcacccctggagataacaggagtcctctagctatagaatcacccctggagataacaggagatatcaggagtcctctagctaaaTAATCAcacctggagataacaggagtcctctagttatAAGATAACCCCTGGAGATAataggagtcctctagctatagaatcacccctggagataacaggagtcctccagctatagaatcacccctggagataacaagAGTCCTCTAGTTATAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387741 lncRNA upstream 221 46516175 ~ 46517158 (+) True G2087655
TU2387652 lncRNA upstream 17882 46493922 ~ 46499497 (+) True G2087592
TU2387661 lncRNA upstream 19434 46453058 ~ 46497945 (+) True G2087596
TU2387750 lncRNA downstream 10283 46535508 ~ 46536128 (+) True G2087659
TU2387757 lncRNA downstream 20271 46545496 ~ 46545889 (+) True G2087664
TU2387837 lncRNA downstream 111395 46636620 ~ 46637423 (+) True G2087704
TU2387898 lncRNA downstream 183683 46708908 ~ 46709880 (+) True G2087756
TU2387804 lncRNA downstream 232977 46758202 ~ 46761993 (+) False fndc3a
XM_036965251.1 mRNA upstream 106212 46375319 ~ 46411167 (+) False nek3
XM_036965783.1 mRNA downstream 47996 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA downstream 47996 46573221 ~ 46576187 (+) True cysltr2b
XM_036965065.1 mRNA downstream 54395 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 66357 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 102672 46627897 ~ 46758317 (+) False fndc3a
TU2387647 other upstream 20492 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 20492 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 20492 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 20492 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 193685 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 501894 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 511817 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 1000215 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 1007197 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1328881 47854106 ~ 47864829 (+) True G2088870