RNA id: TU2387757


Basic Information

Item Value
RNA id TU2387757
length 340
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G2087664
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46545496 ~ 46545889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCTTTAGGAGGGCTTTGTGTACGTGGATACACTTTCCATCCACAAGGAACTTGAGATCTGAGATGTCCGGGCTGTCAAACTCCCTCTTCAGAGACTGGGCCACCGTCAGATAGTCATCACCGTCTGAATAACACAGACCAAAAAAATCAGTCAGTCCTCTAAAAGAGGCCAGAGCAACGAAAACACTCAAACCCATTGGAAATACTTAAAATAGTATCTGATCCCAGGTCTGTAACCATCATCACATCCTGTACAGCCTCAGTCTTACCCACGGTTGAGGAGGTGTGTCAGTCTTACCCACGGTTGAGGAGGTGTGTCAGTCTTACCCACGGTTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387750 lncRNA upstream 9368 46535508 ~ 46536128 (+) True G2087659
TU2387735 lncRNA upstream 19981 46510111 ~ 46525515 (+) False G2087654
TU2387743 lncRNA upstream 20144 46511535 ~ 46525352 (+) False G2087656
TU2387742 lncRNA upstream 20144 46518843 ~ 46525352 (+) True G2087656
TU2387740 lncRNA upstream 20271 46511002 ~ 46525225 (+) False G2087654
TU2387837 lncRNA downstream 90731 46636620 ~ 46637423 (+) True G2087704
TU2387898 lncRNA downstream 163019 46708908 ~ 46709880 (+) True G2087756
TU2387804 lncRNA downstream 212313 46758202 ~ 46761993 (+) False fndc3a
TU2387808 lncRNA downstream 212313 46758202 ~ 46761993 (+) False fndc3a
TU2387809 lncRNA downstream 212313 46758202 ~ 46761993 (+) False fndc3a
XM_036965251.1 mRNA upstream 134329 46375319 ~ 46411167 (+) False nek3
XM_036965783.1 mRNA downstream 27332 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA downstream 27332 46573221 ~ 46576187 (+) True cysltr2b
XM_036965065.1 mRNA downstream 33731 46579620 ~ 46758317 (+) False fndc3a
XM_036965064.1 mRNA downstream 45693 46591582 ~ 46758317 (+) False fndc3a
XM_036965066.1 mRNA downstream 82008 46627897 ~ 46758317 (+) False fndc3a
TU2387647 other upstream 48609 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 48609 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 48609 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 48609 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 221802 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 481230 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 491153 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 979551 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 986533 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1308217 47854106 ~ 47864829 (+) True G2088870

Expression Profile