RNA id: TU2387898


Basic Information

Item Value
RNA id TU2387898
length 899
lncRNA type intronic
GC content 0.44
exon number 2
gene id G2087756
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46708908 ~ 46709880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcgtaaaggtgggggggtaatgcaaatagtctgggtggccatttgattggCTTTTCtggagtcttattgcttggggggtagaagctgtttagaagcctcttggacctagacttggcgctctggtatttttagggccttcctctgacaccgcctagtatataggtcctggatggcaggaagcttggccccggtgatgtactgggccgtacgcactacatcCAGCTGGTCTCACAACCGAAGATCACATGTAACCAGGACTTTTGAGACCAGCcgcctggacagctgatgaaactgtaggtttgcacaaccaaagaatttctgcacaaactgtctcagggaagctcatctgcatgttcGTCGTCCtcgccagggtcttgacctgactgagGTCTGGCGTCGTTACCGACTTaagcattgtgaacagagtgccccatggtggctggcggtggggttatggtatgggccggcacaagctacggacaacaaacacaattgtatttattgatggcaatttgaatgcacagagatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaacccccaaaacagcaatgcaggtgtagaagcaccgtaACAATAAACATTCACTAATAACTGTAGAAGCACCGTAACAATAAATATTCACTAATAACTGTAGAAGCACCGTAACAATAAACATTCACTAATAACTGTAGAAGCACCGTAACAATAAACATTCACTAATAACTGTAGAAGCACCGTAACAATAAATATTCACTAATAACTGTAGAAGCACCGTAACAATAAATATTCACTAATAACTGTAGAAGCACCGTAACAATAAATATTCACTAATAACTGTAGAAGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387837 lncRNA upstream 71485 46636620 ~ 46637423 (+) True G2087704
TU2387757 lncRNA upstream 163019 46545496 ~ 46545889 (+) True G2087664
TU2387750 lncRNA upstream 172780 46535508 ~ 46536128 (+) True G2087659
TU2387742 lncRNA upstream 183556 46518843 ~ 46525352 (+) True G2087656
TU2387738 lncRNA upstream 183683 46517816 ~ 46525225 (+) False G2087654
TU2387804 lncRNA downstream 48322 46758202 ~ 46761993 (+) False fndc3a
TU2387808 lncRNA downstream 48322 46758202 ~ 46761993 (+) False fndc3a
TU2387809 lncRNA downstream 48322 46758202 ~ 46761993 (+) False fndc3a
TU2387787 lncRNA downstream 49107 46758987 ~ 46761993 (+) False fndc3a
TU2387789 lncRNA downstream 49107 46758987 ~ 46761993 (+) False fndc3a
XM_036965783.1 mRNA upstream 132721 46573221 ~ 46576187 (+) False cysltr2b
XM_036965784.1 mRNA upstream 132721 46573221 ~ 46576187 (+) True cysltr2b
XM_036965253.1 mRNA upstream 297741 46375319 ~ 46411167 (+) False nek3
XR_005039994.1 mRNA downstream 33116 46742996 ~ 46745025 (+) False LOC118944696
XR_005039995.1 mRNA downstream 33116 46742996 ~ 46745025 (+) True LOC118944696
XM_021588563.2 mRNA downstream 64532 46774412 ~ 46783031 (+) True mlnr
XM_036965301.1 mRNA downstream 112047 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA downstream 112048 46821928 ~ 46897922 (+) True zgc:153184
TU2387647 other upstream 212021 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 212021 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 212021 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 212021 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 385214 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 317239 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 327162 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 815560 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 822542 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1144226 47854106 ~ 47864829 (+) True G2088870

Expression Profile