RNA id: TU2387943


Basic Information

Item Value
RNA id TU2387943
length 284
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G2087799
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46817093 ~ 46820232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatctagaatcggctttctattccgcaacaaagcctccttcactcacgccgccaagcttaccctagtaaaactgactatcctaccgatcctcgacttcggcgatgtcatctacaaaatagcttccaatactctactcagcaaactgaatgcagtttatcacagtgccatccgttttgttactaaagcaccttataccacccaccactgcgacctgtatgctctagtcggctggccctcgctacatattcctcgccagacccactggctccaggtcatctacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2387804 lncRNA upstream 55100 46758202 ~ 46761993 (+) False fndc3a
TU2387808 lncRNA upstream 55100 46758202 ~ 46761993 (+) False fndc3a
TU2387809 lncRNA upstream 55100 46758202 ~ 46761993 (+) False fndc3a
TU2387787 lncRNA upstream 55100 46758987 ~ 46761993 (+) False fndc3a
TU2387789 lncRNA upstream 55100 46758987 ~ 46761993 (+) False fndc3a
TU2387958 lncRNA downstream 21823 46842055 ~ 46848568 (+) True G2087812
TU2387982 lncRNA downstream 80371 46900603 ~ 46903258 (+) True G2087829
TU2387991 lncRNA downstream 95135 46915367 ~ 46915941 (+) True G2087833
TU2387994 lncRNA downstream 97665 46917897 ~ 46918268 (+) True G2087836
TU2387865 lncRNA downstream 116581 46936813 ~ 46937184 (+) True G2087727
XM_021588563.2 mRNA upstream 34062 46774412 ~ 46783031 (+) True mlnr
XM_036965064.1 mRNA upstream 58776 46591582 ~ 46758317 (+) False fndc3a
XM_036965301.1 mRNA downstream 1695 46821927 ~ 46897922 (+) False zgc:153184
XM_036965300.1 mRNA downstream 1696 46821928 ~ 46897922 (+) True zgc:153184
XM_036965302.1 mRNA downstream 86618 46906850 ~ 46930260 (+) False LOC110508118
XM_036965303.1 mRNA downstream 94556 46914788 ~ 46930260 (+) True LOC110508118
XM_036965306.1 mRNA downstream 126638 46946870 ~ 46959779 (+) True guca1c
TU2387647 other upstream 320206 46493922 ~ 46496887 (+) False G2087592
TU2387649 other upstream 320206 46493922 ~ 46496887 (+) False G2087592
TU2387650 other upstream 320206 46493922 ~ 46496887 (+) False G2087592
TU2387651 other upstream 320206 46493922 ~ 46496887 (+) False G2087592
TU2387599 other upstream 493399 46323084 ~ 46323694 (+) True G2087569
TU2388024 other downstream 206887 47027119 ~ 47028563 (+) True G2087865
TU2387877 other downstream 216810 47037042 ~ 47038403 (+) True prcp
TU2389161 other downstream 705208 47525440 ~ 47528548 (+) True G2088729
TU2389165 other downstream 712190 47532422 ~ 47537945 (+) True G2088732
TU2389353 other downstream 1033874 47854106 ~ 47864829 (+) True G2088870

Expression Profile